PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80851-80900 / 86044 show all
qzeng-customSNP*map_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
qzeng-customSNP*map_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.7959
20102000
qzeng-customSNP*map_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNP*map_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNP*map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNP*map_l150_m1_e0hetalt
75.0000
60.0000
100.0000
92.6829
1281200
qzeng-customSNP*map_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.6842
1281200
qzeng-customSNP*map_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.7173
1281200
qzeng-customSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customSNP*map_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
qzeng-customSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
qzeng-customSNP*segduphetalt
100.0000
100.0000
100.0000
97.9228
70700
qzeng-customSNP*segdupwithalt*
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthet
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthetalt
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtiHG002complexvarhetalt
97.0149
94.2029
100.0000
39.1447
1951218500
qzeng-customSNPtiHG002compoundhethetalt
98.4211
96.8912
100.0000
21.9547
5611855100
qzeng-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
qzeng-customSNPtidecoyhet
0.0000
100.0000
00000
qzeng-customSNPtidecoyhetalt
0.0000
100.0000
00000
qzeng-customSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9922
00200
qzeng-customSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
96.5318
1201200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.5294
97.1014
100.0000
91.7160
6727000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
96.5318
1201200
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
92.8571
10100
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000