PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80751-80800 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.4172 | 77.6471 | 100.0000 | 57.9832 | 66 | 19 | 50 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 60.0000 | 39 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.9583 | 58.6777 | 100.0000 | 49.7207 | 213 | 150 | 90 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 49.0909 | 32.5301 | 100.0000 | 83.3333 | 27 | 56 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4903 | 70.1987 | 100.0000 | 69.8113 | 106 | 45 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 50.0000 | 100.0000 | 6 | 6 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 87.8049 | 3 | 1 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.4545 | 5 | 3 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.2459 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 85.4839 | 5 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_siren | hetalt | 84.8000 | 73.6111 | 100.0000 | 78.3333 | 53 | 19 | 26 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | segdup | hetalt | 86.0759 | 75.5556 | 100.0000 | 90.9091 | 34 | 11 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 3 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||