PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
8001-8050 / 86044 show all
ghariani-varprowlINDELD6_15HG002compoundhethet
22.6701
91.4720
12.9384
39.2155
7837380854375400
99.3195
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.6324
98.9002
88.8973
60.3677
1169131169146145
99.3151
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
56.9927
87.3563
42.2925
67.1172
53277535730725
99.3151
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
71.5778
68.2094
75.2961
64.2035
899419890292290
99.3151
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
48.4627
89.8402
33.1807
64.3673
7878979716051594
99.3146
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.8109
99.7103
95.9825
45.9159
103273010321432429
99.3056
dgrover-gatkINDELD1_5HG002compoundhethomalt
80.0000
99.6564
66.8203
87.9210
2901290144143
99.3056
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
63.5773
97.5422
47.1569
24.3464
190548192421562141
99.3043
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
81.7362
74.1234
91.0918
40.7803
439715354397430427
99.3023
mlin-fermikitINDELD16_PLUSHG002compoundhethomalt
7.6994
87.5000
4.0268
56.6860
716143142
99.3007
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
59.1835
45.3355
85.2120
34.7503
277334824143142
99.3007
eyeh-varpipeINDELD16_PLUSHG002complexvarhet
67.4853
60.0723
76.9854
48.1513
665442475142141
99.2958
ghariani-varprowlINDELI16_PLUSHG002compoundhethet
4.7472
34.0426
2.5515
55.6957
163126993986
99.2951
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
48.6766
60.9756
40.5063
39.2308
251696141140
99.2908
jpowers-varprowlINDELI6_15HG002compoundhet*
2.5440
1.9257
3.7472
39.3654
169860716943414310
99.2859
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5527
99.8046
97.3318
50.7832
5107105107140139
99.2857
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6771
99.7888
97.5899
57.2270
5669125669140139
99.2857
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.3222
88.6547
76.8340
52.5393
14301831393420417
99.2857
astatham-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.9107
623096230280278
99.2857
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.9950
99.9034
98.1030
36.7067
724077240140139
99.2857
ckim-gatkINDELI6_15*homalt
97.7332
99.8557
95.6989
54.8919
623096230280278
99.2857
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
ckim-vqsrINDELI6_15*homalt
97.7408
99.8557
95.7136
54.8957
623096230279277
99.2832
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.9231
98.9002
80.7746
59.1871
1169131168278276
99.2806
jlack-gatkINDELI1_5HG002compoundhethomalt
60.9506
99.3921
43.9516
87.9475
3272327417414
99.2806
eyeh-varpipeINDELI6_15HG002complexvarhomalt
78.9714
80.2306
77.7510
38.7303
974240968277275
99.2780
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
82.4326
94.7547
72.9465
54.9486
1120621119415412
99.2771
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.3437
83.1499
87.6565
44.9532
982199980138137
99.2754
gduggal-bwafbINDELI16_PLUSHG002compoundhet*
58.0785
43.2571
88.3503
33.1438
92712161039137136
99.2701
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
82.5923
77.5927
88.2806
60.8637
10252961032137136
99.2701
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
55.0999
88.5135
40.0000
49.5006
13117182273271
99.2674
mlin-fermikitINDELI6_15**
85.1815
80.6671
90.2311
47.3715
2002447992010821772161
99.2650
jmaeng-gatkINDELD6_15HG002compoundhethomalt
26.0870
100.0000
15.0000
70.0375
24024136135
99.2647
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6346
96.2423
97.0302
52.9948
1326751813265406403
99.2611
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.4346
30.2162
37.4205
71.0821
643148564710821074
99.2606
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.2627
83.1081
39.1892
51.8438
1232587135134
99.2593
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.6047
83.4039
87.9249
45.2229
985196983135134
99.2593
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5576
99.9158
97.2359
49.7376
474944749135134
99.2593
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4055
83.0652
87.8815
45.0961
981200979135134
99.2593
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.1139
37.4782
48.0583
42.5126
771912877771083338271
99.2560
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1416
74.7118
81.9014
40.1032
304610313041672667
99.2560
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6391
99.8632
97.4447
51.1732
511075110134133
99.2537
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6293
99.8437
97.4442
51.1779
510985109134133
99.2537
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
82.2770
90.3226
75.5474
70.8511
47651414134133
99.2537