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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7951-8000 / 86044 show all
jmaeng-gatkINDELD1_5HG002compoundhethomalt
78.1671
99.6564
64.3016
87.6742
2901290161160
99.3789
hfeng-pmm1INDEL*HG002compoundhethomalt
73.5533
99.1254
58.4695
77.3735
6806680483480
99.3789
ckim-vqsrINDELI6_15HG002compoundhet*
94.2580
92.3997
96.1926
36.2881
81096678110321319
99.3769
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200het
28.8874
67.7551
18.3569
52.9208
33215832414411432
99.3754
hfeng-pmm2INDELI1_5HG002compoundhethomalt
80.1471
99.3921
67.1458
86.0378
3272327160159
99.3750
dgrover-gatkINDELI6_15HG002compoundhet*
94.9104
93.5962
96.2620
37.4707
82145628215319317
99.3730
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9837
67.6931
89.2302
57.8962
263812592643319317
99.3730
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
58.5321
47.8735
75.2959
43.8204
25442770871428592841
99.3704
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
26.8074
23.6447
30.9468
56.6057
929300092520642051
99.3702
raldana-dualsentieonINDELI6_15HG002compoundhethomalt
16.3588
100.0000
8.9080
58.9623
31031317315
99.3691
astatham-gatkINDELI1_5HG002compoundhet*
96.1407
94.9417
97.3704
66.4075
1173162511738317315
99.3691
ghariani-varprowlINDELD16_PLUSHG002compoundhet*
18.0085
15.8906
20.7778
37.7809
372196937414261417
99.3689
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.1348
99.7788
90.9039
60.3967
315873158316314
99.3671
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4992
99.3239
93.8307
37.7780
7198497194473470
99.3658
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
44.3050
88.6576
29.5314
54.8186
85210985720452032
99.3643
jpowers-varprowlINDELI6_15**
57.4140
50.4492
66.6100
47.5997
12523123001254262876247
99.3638
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
81.2428
98.3287
69.2157
47.0954
3536353157156
99.3631
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
39.3470
36.3683
42.8571
67.0539
7031230705940934
99.3617
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
48.9376
37.8496
69.2135
34.1472
14752422492821922178
99.3613
jpowers-varprowlINDELI6_15HG002complexvarhet
76.9804
82.9299
71.8274
56.3262
19534021981777772
99.3565
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
50.2642
88.4376
35.1094
44.6429
2417316243845064477
99.3564
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.8238
95.1411
88.7300
60.2423
109265581092013871378
99.3511
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_51to200het
24.0496
54.0000
15.4696
54.9751
272328153152
99.3464
ckim-vqsrINDELD1_5HG002compoundhethomalt
79.0191
99.6564
65.4628
87.5701
2901290153152
99.3464
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.3630
32.4556
38.8425
53.3428
44749311447070386992
99.3464
ckim-gatkINDELI1_5HG002compoundhet*
94.8213
92.3843
97.3904
66.1548
1141594111420306304
99.3464
ckim-gatkINDELD1_5HG002compoundhethomalt
79.0191
99.6564
65.4628
87.5701
2901290153152
99.3464
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.2240
99.4840
85.9515
72.5594
217861132236236553631
99.3434
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4485
99.8241
97.1103
48.4061
510895108152151
99.3421
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.5830
99.8064
97.3892
55.2704
5670115670152151
99.3421
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.6674
96.3091
85.6501
61.6361
36271393623607603
99.3410
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.6674
96.3091
85.6501
61.6361
36271393623607603
99.3410
ckim-vqsrINDELI1_5HG002compoundhet*
94.7676
92.2629
97.4120
66.1892
1140095611405303301
99.3399
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
65.3933
98.2278
49.0105
39.1883
232842232824222406
99.3394
raldana-dualsentieonINDEL*HG002compoundhet*
92.3506
90.1368
94.6759
61.0439
2700529552688715121502
99.3386
jlack-gatkINDEL*HG002compoundhethomalt
47.4306
99.5627
31.1304
79.5488
683368315111501
99.3382
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.2746
85.2632
38.7403
67.1378
1134196114418091797
99.3367
jmaeng-gatkINDEL*HG002compoundhethomalt
60.0968
99.5627
43.0372
84.8886
6833683904898
99.3363
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
35.3007
32.2054
39.0543
51.0895
35697513356855685531
99.3355
bgallagher-sentieonINDEL*HG002compoundhet*
93.7345
93.5147
93.9554
62.6967
2801719432790117951783
99.3315
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
28.4209
18.3007
63.5810
52.0444
2801250522299297
99.3311
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
28.4209
18.3007
63.5810
52.0444
2801250522299297
99.3311
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.5413
96.7290
88.7011
66.3212
35191193517448445
99.3304
jmaeng-gatkINDELI6_15HG002compoundhethomalt
17.2702
100.0000
9.4512
62.3853
31031297295
99.3266
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
77.1843
73.4104
81.3673
37.5411
1340448551361631183097
99.3265
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1726
72.6852
64.1876
28.7853
15759794443440
99.3228
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.2102
88.3164
94.3001
47.2057
24343222432147146
99.3197
astatham-gatkINDELD1_5HG002compoundhethomalt
79.6703
99.6564
66.3616
87.7109
2901290147146
99.3197