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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7901-7950 / 86044 show all
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
96.1382
99.7890
92.7451
61.9630
236552365185184
99.4595
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.1110
99.6849
92.7845
59.2169
9491309490738734
99.4580
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
30.1078
27.6176
33.0916
63.8123
364954365738734
99.4580
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.2288
98.9002
86.4006
59.8278
1169131169184183
99.4565
raldana-dualsentieonINDELI6_15HG002compoundhet*
92.3351
89.3573
95.5182
36.0215
78429347843368366
99.4565
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.0569
99.3663
91.1057
57.4139
5645365644551548
99.4555
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.0251
32.1184
38.5102
64.1905
10312179103416511642
99.4549
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.7380
98.6175
84.0244
38.7433
1926271925366364
99.4536
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
95.3176
99.5904
91.3963
41.9328
194581944183182
99.4536
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.1322
81.9681
80.3133
62.9774
29826562974729725
99.4513
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
22.2368
13.7681
57.7726
41.9919
57357249182181
99.4505
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
28.4651
25.7208
31.8650
61.9879
339979340727723
99.4498
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
69.4218
66.5306
72.5758
57.3368
489246479181180
99.4475
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
43.9535
83.9779
29.7665
62.1084
30458306722718
99.4460
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
58.5125
78.4461
46.6568
31.7444
31386314359357
99.4429
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.4578
77.0718
28.3552
59.9110
27983281710706
99.4366
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.5816
99.2511
94.0520
47.6931
2783212783176175
99.4318
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.9036
99.8930
94.0880
54.4523
280132801176175
99.4318
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
51.3203
40.1741
71.0262
37.0164
9691443474119341923
99.4312
jpowers-varprowlINDEL*HG002compoundhethet
23.2624
81.2408
13.5747
59.7974
332676835022229622169
99.4304
jmaeng-gatkINDELI6_15HG002compoundhet*
93.8901
92.0123
95.8462
36.5464
80757018076350348
99.4286
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
66.5492
86.1631
54.2091
50.6979
1426229143612131206
99.4229
jpowers-varprowlINDELD6_15HG002compoundhethet
21.3553
84.1121
12.2302
37.5281
72013674853685337
99.4225
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
36.2353
32.7562
40.5412
52.4633
48439942483970977056
99.4223
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.7765
99.6055
96.0134
48.3178
8333338333346344
99.4220
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
57.3405
87.8864
42.5514
59.2810
4919678495066836644
99.4164
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.7235
99.7792
97.6898
36.3761
7231167231171170
99.4152
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5837
99.9406
99.2292
75.9456
218861321886170169
99.4118
raldana-dualsentieonINDELD1_5HG002compoundhethomalt
77.2304
99.6564
63.0435
84.6769
2901290170169
99.4118
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
80.9211
77.9906
84.0804
49.2093
1075130341074820352023
99.4103
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.4960
66.6208
30.1322
55.6999
1451727145933833363
99.4088
jli-customINDEL*HG002compoundhethomalt
72.9600
99.7085
57.5273
84.4270
6842684505502
99.4059
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9393
99.8565
98.0388
61.8965
8348128348167166
99.4012
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9393
99.8565
98.0388
61.8965
8348128348167166
99.4012
ckim-dragenINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
87.6552
99.6678
78.2269
51.0842
6002600167166
99.4012
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
71.5972
91.9862
58.6068
39.8738
9573834960867866745
99.3958
raldana-dualsentieonINDELD6_15HG002compoundhet*
93.9555
91.8392
96.1717
34.6920
82947378290330328
99.3939
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50het
79.4844
92.6189
69.6125
45.3619
3388270339514821473
99.3927
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
86.6565
78.2921
97.0220
41.1897
534514825343164163
99.3902
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
61.5270
78.8288
50.4532
56.2459
35094334328326
99.3902
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
84.3152
93.7856
76.5821
40.7415
21431422142655651
99.3893
astatham-gatkINDELI6_15HG002compoundhet*
94.7145
93.3113
96.1606
37.2227
81895878190327325
99.3884
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.2086
91.0256
73.3029
53.9573
4047399401714631454
99.3848
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
82.7974
80.3556
85.3922
44.8533
949232947162161
99.3827
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
87.8983
88.3895
87.4126
38.3916
236311125162161
99.3827
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200*
52.7192
50.5474
55.0862
52.4074
10621039991808803
99.3812
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
74.5853
86.8721
65.3433
69.9161
761115609323321
99.3808
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
mlin-fermikitINDELI6_15*homalt
94.2236
95.9609
92.5481
47.3706
59872526011484481
99.3802
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8569
39.4929
49.3052
41.4961
721111048720374067360
99.3789