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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7851-7900 / 86044 show all
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
45.9328
83.4475
31.6874
62.3505
73114573815911584
99.5600
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
53.8085
55.7377
52.0085
38.7306
6854246227226
99.5595
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
jpowers-varprowlINDELI16_PLUS**
56.3839
48.9258
66.5246
59.4066
31203257312215711564
99.5544
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
49.3231
87.8558
34.2857
65.7723
46364468897893
99.5541
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.4596
98.1094
87.4251
55.1844
9341180933713431337
99.5532
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
50.2630
46.4740
54.7247
37.4043
804926805666663
99.5495
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.6407
81.6652
39.9361
49.3327
119372680120081806017978
99.5460
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
gduggal-bwafbINDELI16_PLUS**
66.2146
51.1369
93.9014
38.2990
326131163372219218
99.5434
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
67.8919
98.5775
51.7751
39.8577
69310700652649
99.5399
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4607
73.6600
54.2174
39.2369
481172231419541945
99.5394
ghariani-varprowlINDELI6_15HG002compoundhethet
7.4887
61.5385
3.9869
41.9228
1288017141184099
99.5386
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
77.1881
96.8041
64.1824
31.3791
100263311624290649022
99.5366
bgallagher-sentieonINDELD1_5HG002compoundhethomalt
72.9560
99.6564
57.5397
87.1560
2901290214213
99.5327
bgallagher-sentieonINDELI6_15HG002compoundhet*
93.1478
91.3856
94.9793
37.0668
80207568021424422
99.5283
jpowers-varprowlINDELI16_PLUSHG002compoundhet*
1.3665
1.0266
2.0427
54.2286
2221212210551050
99.5261
hfeng-pmm1INDELI6_15*homalt
98.1442
99.5993
96.7310
48.9389
6214256214210209
99.5238
bgallagher-sentieonINDELI1_5HG002compoundhet*
95.0768
93.6792
96.5167
65.8897
1157578111582418416
99.5215
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
ckim-dragenINDELI6_15*homalt
96.6294
99.7115
93.7321
54.6498
6221186221416414
99.5192
hfeng-pmm1INDELI6_15HG002compoundhethomalt
23.0483
100.0000
13.0252
62.1019
31031207206
99.5169
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.7662
69.4733
90.9290
52.5276
20719102075207206
99.5169
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.1624
85.4630
88.9307
63.9481
16522811655206205
99.5146
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4496
99.8356
99.0666
73.6565
218633621863206205
99.5146
mlin-fermikitINDELI6_15HG002compoundhethomalt
11.9676
93.5484
6.3927
50.6201
29228410408
99.5122
jpowers-varprowlINDELI1_5HG002compoundhethet
20.5402
73.6471
11.9344
70.4320
62622469150995074
99.5097
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
53.5870
96.7318
37.0581
53.6813
3167107318754135386
99.5012
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
62.4468
81.4917
50.6173
72.8005
29567205200199
99.5000
jlack-gatkINDELD6_15HG002compoundhethomalt
19.5122
100.0000
10.8108
46.5060
24024198197
99.4949
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.5338
99.7378
97.3585
36.6570
7228197224196195
99.4898
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0712
99.8632
96.3424
50.4716
511075110194193
99.4845
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2332
99.8240
96.6922
56.9130
5671105671194193
99.4845
gduggal-bwafbINDELD6_15HG002compoundhethomalt
7.0180
95.8333
3.6424
68.7371
23122582579
99.4845
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8081
34.5074
68.1144
30.9514
12052287454821292118
99.4833
hfeng-pmm3INDELI6_15*homalt
98.2839
99.5993
97.0028
48.9358
6214256214192191
99.4792
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.2556
85.1120
46.6359
49.9659
71461250718182178174
99.4767
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.9356
99.8106
96.1297
54.5329
474494744191190
99.4764
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.4738
29.1984
36.5769
50.5553
40259760402269746937
99.4695
hfeng-pmm3INDELI6_15HG002compoundhethomalt
24.8000
100.0000
14.1553
62.6280
31031188187
99.4681
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
bgallagher-sentieonINDELD1_5HG002compoundhet*
95.8155
94.7855
96.8682
66.0428
1159763811599375373
99.4667
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.1971
91.6616
76.1638
51.6125
30012732994937932
99.4664
bgallagher-sentieonINDELD6_15HG002compoundhethomalt
20.4255
100.0000
11.3744
65.9677
24024187186
99.4652
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.8916
83.4278
44.3245
56.1428
148662953149401876618665
99.4618