PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78001-78050 / 86044 show all
raldana-dualsentieonSNPtvmap_l150_m2_e1hetalt
94.7368
90.0000
100.0000
77.5000
1821800
raldana-dualsentieonSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
88.8889
40400
raldana-dualsentieonSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
87.8049
50500
raldana-dualsentieonSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
88.0952
50500
raldana-dualsentieonSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.2766
70700
raldana-dualsentieonSNPtvsegdupwithalt*
0.0000
100.0000
00000
raldana-dualsentieonSNPtvsegdupwithalthet
0.0000
100.0000
00000
raldana-dualsentieonSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
48.3871
3213200
raldana-dualsentieonSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDEL*decoy*
94.7368
90.0000
100.0000
99.9971
91900
rpoplin-dv42INDEL*decoyhet
90.9091
83.3333
100.0000
99.9534
51500
rpoplin-dv42INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8494
10100
rpoplin-dv42INDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9304
30300
rpoplin-dv42INDEL*func_cdshetalt
88.8889
80.0000
100.0000
66.6667
41400
rpoplin-dv42INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.4848
21200
rpoplin-dv42INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
75.0000
60.0000
100.0000
99.7326
32300
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
92.2581
85.6287
100.0000
64.9635
1432414400
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.3051
21200
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
85.7143
75.0000
100.0000
99.7273
31300
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
89.6552
81.2500
100.0000
99.8895
1331300
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
95.0000
90.4762
100.0000
99.9564
1921900
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7438
99.4888
100.0000
45.1051
214111214200
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDEL*segduphetalt
96.4143
93.0769
100.0000
95.1464
121912100
rpoplin-dv42INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9996
10100
rpoplin-dv42INDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9953
10100
rpoplin-dv42INDEL*segdupwithalthetalt
0.0000
100.0000
00000
rpoplin-dv42INDEL*segdupwithalthomalt
0.0000
100.0000
00000
rpoplin-dv42INDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
rpoplin-dv42INDEL*tech_badpromotershomalt
98.4615
96.9697
100.0000
60.9756
3213200
rpoplin-dv42INDELC16_PLUS**
0.0000
100.0000
00000
rpoplin-dv42INDELC16_PLUS*het
0.0000
100.0000
00000
rpoplin-dv42INDELC16_PLUS*hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUS*homalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSHG002complexvar*
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSHG002complexvarhet
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSHG002complexvarhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC16_PLUSHG002complexvarhomalt
0.0000
0.0000
0.0000
00000