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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7751-7800 / 86044 show all
mlin-fermikitINDELI6_15HG002compoundhethet
11.9006
62.5000
6.5764
49.1309
1307810214491446
99.7930
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
78.8680
83.9810
74.3417
54.2249
26585072654916914
99.7817
jpowers-varprowlINDELD16_PLUSHG002compoundhethet
32.6811
83.4568
20.3190
35.8955
3386734413491346
99.7776
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
33.4409
22.7870
62.8044
47.2074
260881748443442
99.7743
astatham-gatkINDEL*HG002compoundhethomalt
60.8541
99.7085
43.7900
84.6320
6842684878876
99.7722
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
26.7554
24.6259
29.2880
56.6011
181554181437436
99.7712
ckim-dragenINDELI6_15HG002compoundhet*
93.2228
91.6135
94.8896
36.8488
80407368040433432
99.7691
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
26.0805
23.8095
28.8303
55.2030
175560175432431
99.7685
dgrover-gatkINDEL*HG002compoundhethomalt
61.4004
99.7085
44.3580
85.1072
6842684858856
99.7669
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5224
99.6844
91.6941
50.1544
4738154736429428
99.7669
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
38.2525
82.8402
24.8677
55.3895
14029141426425
99.7653
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
37.1767
79.2899
24.2806
53.7438
13435135421420
99.7625
jpowers-varprowlINDELI6_15HG002compoundhethet
6.7114
57.6923
3.5629
37.9971
1208815040604050
99.7537
bgallagher-sentieonINDEL*HG002compoundhethomalt
53.1056
99.7085
36.1905
83.1205
684268412061203
99.7512
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.7195
36.5649
68.6675
29.6562
10901891437019941989
99.7492
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
84.1727
99.6274
72.8688
27.5370
722027739427532746
99.7457
ckim-dragenINDELI1_5HG002compoundhethomalt
62.2015
99.0881
45.3278
87.8082
3263325392391
99.7449
mlin-fermikitINDELI6_15HG002compoundhet*
62.8773
55.7315
72.1249
36.3543
48913885489818931888
99.7359
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
88.0775
95.1208
82.0053
38.4898
20471053427752750
99.7340
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
24.2608
21.2264
28.3074
52.9088
585217158214741470
99.7286
bgallagher-sentieonINDELI6_15HG002compoundhethomalt
14.4522
100.0000
7.7889
57.4332
31031367366
99.7275
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.3724
88.2160
27.0230
51.3251
5397254114611457
99.7262
eyeh-varpipeINDELD16_PLUSHG002complexvar*
59.4403
51.7955
69.7324
50.7211
851792834362361
99.7238
eyeh-varpipeINDELI16_PLUSHG002compoundhet*
16.3932
10.4060
38.6054
37.9092
2231920227361360
99.7230
eyeh-varpipeINDEL*HG002compoundhethomalt
7.7309
93.0029
4.0330
55.0612
638485761370613667
99.7155
eyeh-varpipeINDELI6_15HG002compoundhet*
36.3679
28.3500
50.7094
30.4777
24886288250224322425
99.7122
eyeh-varpipeINDELD6_15HG002compoundhet*
39.7758
35.3560
45.4585
32.6471
31935838313837653754
99.7078
raldana-dualsentieonINDELI1_5HG002compoundhet*
94.0016
91.1217
97.0695
64.7141
11259109711262340339
99.7059
jpowers-varprowlINDELI6_15*het
67.8850
81.9496
57.9408
49.0356
82221811826760015983
99.7000
ckim-dragenINDELD6_15HG002compoundhethomalt
12.7321
100.0000
6.7989
76.0353
24024329328
99.6960
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
54.7290
97.4954
38.0419
50.8575
319282319452025186
99.6924
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
eyeh-varpipeINDELI16_PLUS**
50.2841
36.9610
78.6262
37.5078
235740202358641639
99.6880
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
84.5016
90.8408
78.9894
50.4937
12101221188316315
99.6835
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.5750
99.7860
89.8811
59.7231
279862798315314
99.6825
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
27.6434
24.0260
32.5431
70.1799
148468151313312
99.6805
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
68.1729
96.6574
52.6555
45.4921
34712347312311
99.6795
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
45.1741
82.9268
31.0421
68.1047
13628140311310
99.6785
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
68.2551
91.4186
54.4569
32.9265
52249296324782470
99.6772
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
24.4217
20.7792
29.6128
67.8388
128488130309308
99.6764
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
40.0511
70.7317
27.9343
65.1961
11648119307306
99.6743
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.2265
37.0781
43.9591
50.2516
41096973408652095192
99.6736
dgrover-gatkINDELI1_5HG002compoundhet*
96.3058
95.1360
97.5048
66.8717
1175560111762301300
99.6678
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
ckim-gatkINDEL*HG002compoundhethomalt
61.0169
99.7085
43.9589
84.7301
6842684872869
99.6560
ckim-vqsrINDEL*HG002compoundhethomalt
61.0714
99.7085
44.0154
84.7468
6842684870867
99.6552
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
79.3723
90.3851
70.7516
51.9765
3497372346414321427
99.6508
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
22.1585
18.8343
26.9076
54.2967
740318973720021995
99.6503
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.7234
65.8935
89.0004
54.7661
230111912306285284
99.6491