PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7651-7700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | het | 86.2745 | 91.6667 | 81.4815 | 94.7674 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | * | 28.5714 | 25.0000 | 33.3333 | 70.0000 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 92.8070 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.2529 | 91.1111 | 97.6190 | 93.8953 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | het | 87.2727 | 100.0000 | 77.4194 | 39.2157 | 24 | 0 | 24 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.8571 | 80.5556 | 85.2941 | 66.0000 | 29 | 7 | 29 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 78.5083 | 73.5294 | 84.2105 | 64.3750 | 50 | 18 | 48 | 9 | 9 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 29.0805 | 20.8955 | 47.8070 | 73.7629 | 112 | 424 | 109 | 119 | 119 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 58.6404 | 73.8255 | 48.6364 | 71.6495 | 110 | 39 | 107 | 113 | 113 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.5000 | 8.3333 | 25.0000 | 91.3978 | 2 | 22 | 2 | 6 | 6 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.3793 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 44.1176 | 30.0000 | 83.3333 | 99.9060 | 6 | 14 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 61.5385 | 50.0000 | 80.0000 | 99.8972 | 6 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 49.5868 | 35.2941 | 83.3333 | 99.9019 | 6 | 11 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 68.5714 | 60.0000 | 80.0000 | 99.8924 | 6 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | hetalt | 26.6667 | 18.1818 | 50.0000 | 99.5943 | 2 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | hetalt | 37.6569 | 23.8095 | 90.0000 | 99.0440 | 10 | 32 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | hetalt | 36.9610 | 23.2558 | 90.0000 | 99.0548 | 10 | 33 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | hetalt | 30.7692 | 22.2222 | 50.0000 | 99.5050 | 2 | 7 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.4778 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | hetalt | 30.3797 | 19.0476 | 75.0000 | 99.5338 | 4 | 17 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | hetalt | 34.1880 | 21.7391 | 80.0000 | 99.4253 | 5 | 18 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 36.3636 | 80.0000 | 99.8480 | 4 | 7 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 60.0000 | 50.0000 | 75.0000 | 99.8441 | 4 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3333 | 40.0000 | 80.0000 | 99.8413 | 4 | 6 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 52.6316 | 38.4615 | 83.3333 | 99.1018 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.3377 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.2793 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 54.5455 | 42.8571 | 75.0000 | 99.3344 | 3 | 4 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 61.5385 | 50.0000 | 80.0000 | 99.1776 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | homalt | 96.1113 | 93.2773 | 99.1228 | 19.1489 | 111 | 8 | 113 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.9259 | 61.5000 | 99.1935 | 60.2564 | 123 | 77 | 123 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.9688 | 61.9247 | 98.2517 | 67.2018 | 296 | 182 | 281 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.6451 | 61.5607 | 98.0861 | 70.4802 | 213 | 133 | 205 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.9582 | 83.4711 | 99.9208 | 44.6727 | 808 | 160 | 10092 | 8 | 8 | 100.0000 | |