PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76351-76400 / 86044 show all
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
88.7097
63700
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8841
99.7685
100.0000
57.9364
38789387700
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
70.5882
50500
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
90.9091
83.3333
100.0000
91.6667
51500
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0000
10100
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.6744
10100
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvmap_l100_m0_e0hetalt
93.3333
87.5000
100.0000
64.1026
1421400
ltrigg-rtg2SNPtvmap_l100_m1_e0hetalt
96.2025
92.6829
100.0000
63.4615
3833800
ltrigg-rtg2SNPtvmap_l100_m2_e0hetalt
96.2963
92.8571
100.0000
66.0870
3933900
ltrigg-rtg2SNPtvmap_l100_m2_e1hetalt
96.3855
93.0233
100.0000
65.5172
4034000
ltrigg-rtg2SNPtvmap_l125_m0_e0hetalt
87.5000
77.7778
100.0000
74.0741
72700
ltrigg-rtg2SNPtvmap_l125_m1_e0hetalt
96.5517
93.3333
100.0000
61.1111
2822800
ltrigg-rtg2SNPtvmap_l125_m2_e0hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNPtvmap_l125_m2_e1hetalt
96.5517
93.3333
100.0000
67.4419
2822800
ltrigg-rtg2SNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
ltrigg-rtg2SNPtvmap_l150_m1_e0hetalt
94.7368
90.0000
100.0000
67.2727
1821800
ltrigg-rtg2SNPtvmap_l150_m2_e0hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNPtvmap_l150_m2_e1hetalt
94.7368
90.0000
100.0000
71.4286
1821800
ltrigg-rtg2SNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvmap_l250_m0_e0homalt
99.4792
98.9637
100.0000
91.0664
191219100
ltrigg-rtg2SNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.8889
22200
ltrigg-rtg2SNPtvmap_l250_m1_e0homalt
99.7071
99.4159
100.0000
83.9646
851585100
ltrigg-rtg2SNPtvmap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNPtvmap_l250_m2_e0homalt
99.6788
99.3597
100.0000
85.3155
931693100
ltrigg-rtg2SNPtvmap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
86.9565
32300
ltrigg-rtg2SNPtvmap_l250_m2_e1homalt
99.6819
99.3658
100.0000
85.4444
940694000
ltrigg-rtg2SNPtvsegduphetalt
100.0000
100.0000
100.0000
96.8037
70700
ltrigg-rtg2SNPtvsegdupwithalt*
0.0000
100.0000
00000
ltrigg-rtg2SNPtvsegdupwithalthet
0.0000
100.0000
00000
ltrigg-rtg2SNPtvsegdupwithalthetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvsegdupwithalthomalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtvtech_badpromotershomalt
100.0000
100.0000
100.0000
53.0120
3903900
mlin-fermikitINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.7442
10100
mlin-fermikitINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9256
30300
mlin-fermikitINDEL*func_cdshetalt
75.0000
60.0000
100.0000
66.6667
32300
mlin-fermikitINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.9011
12100
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.7342
12100
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.5397
81.0606
100.0000
76.2115
1072510800
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.7805
11100