PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76251-76300 / 86044 show all
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7779
99.5567
100.0000
49.8447
11235113000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7607
99.5225
100.0000
43.1975
14597147800
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8249
99.6503
100.0000
45.9813
855386700
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.0233
86.9565
100.0000
86.6667
6096000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.4596
95.0450
100.0000
78.5906
4222239800
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10200
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0027
96.0836
100.0000
76.6463
3681534400
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.6552
20300
ltrigg-rtg2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3336
98.6760
100.0000
74.6486
238532238100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.3741
98.7559
100.0000
56.8481
166721167300
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
80.0000
66.6667
100.0000
93.6508
42400
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8863
99.7728
100.0000
39.6930
21965220000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
88.8889
10100
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200*
93.3333
87.5000
100.0000
93.2584
71600
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
93.6709
60500
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
90.0000
11100
ltrigg-rtg2SNPtimap_l100_m0_e0hetalt
92.3077
85.7143
100.0000
61.2903
1221200
ltrigg-rtg2SNPtimap_l100_m1_e0hetalt
96.4286
93.1034
100.0000
61.9718
2722700
ltrigg-rtg2SNPtimap_l100_m2_e0hetalt
96.5517
93.3333
100.0000
64.5570
2822800
ltrigg-rtg2SNPtimap_l100_m2_e1hetalt
96.6667
93.5484
100.0000
63.7500
2922900
ltrigg-rtg2SNPtimap_l125_m0_e0hetalt
85.7143
75.0000
100.0000
70.0000
62600
ltrigg-rtg2SNPtimap_l125_m1_e0hetalt
95.6522
91.6667
100.0000
53.1915
2222200
ltrigg-rtg2SNPtimap_l125_m2_e0hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l125_m2_e1hetalt
95.6522
91.6667
100.0000
62.7119
2222200
ltrigg-rtg2SNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
78.5714
30300
ltrigg-rtg2SNPtimap_l150_m1_e0hetalt
92.8571
86.6667
100.0000
61.7647
1321300
ltrigg-rtg2SNPtimap_l150_m2_e0hetalt
92.8571
86.6667
100.0000
69.0476
1321300