PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1518 1519 1520 1521 1522 1523 1524 1525 1526 ... 1720 1721 » 76051-76100 / 86044 show all
ltrigg-rtg2	INDEL	I6_15	func_cds	het	100.0000	100.0000	100.0000	34.2857	24	0	23	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	hetalt	85.7143	75.0000	100.0000	42.8571	3	1	4	0	0
ltrigg-rtg2	INDEL	I6_15	func_cds	homalt	100.0000	100.0000	100.0000	28.5714	15	0	15	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	94.8276	90.1639	100.0000	55.6452	55	6	55	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	62.1053	36	0	36	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.5904	95.2941	100.0000	62.7193	81	4	85	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	60.3376	92	0	94	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3763	98.7603	100.0000	63.6228	239	3	243	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	64.2643	120	2	119	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	99.0291	98.0769	100.0000	64.9682	51	1	55	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	61.2360	68	0	69	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het	80.0000	66.6667	100.0000	85.3659	6	3	6	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3607	96.7742	100.0000	82.2823	60	2	59	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8529	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.6721	2	0	2	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	39.9497	235	2	239	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	52.5000	59	0	57	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	91.6667	84.6154	100.0000	70.2703	11	2	11	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	92.8571	1	0	1	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	90.9091	83.3333	100.0000	56.5217	10	2	10	0	0
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m0_e0	*	90.0000	81.8182	100.0000	86.5672	27	6	27	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m0_e0	het	86.6667	76.4706	100.0000	85.7143	13	4	13	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m0_e0	hetalt	85.7143	75.0000	100.0000	94.5455	3	1	3	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m0_e0	homalt	95.6522	91.6667	100.0000	80.0000	11	1	11	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m1_e0	*	95.8904	92.1053	100.0000	80.2734	105	9	101	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m1_e0	het	95.5752	91.5254	100.0000	78.2427	54	5	52	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m1_e0	hetalt	95.2381	90.9091	100.0000	86.0294	20	2	19	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m1_e0	homalt	96.8750	93.9394	100.0000	78.1022	31	2	30	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m2_e0	*	95.9641	92.2414	100.0000	81.9298	107	9	103	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m2_e0	het	95.7265	91.8033	100.0000	79.6992	56	5	54	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m2_e0	hetalt	95.2381	90.9091	100.0000	87.3333	20	2	19	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m2_e0	homalt	96.8750	93.9394	100.0000	80.5195	31	2	30	0	0
ltrigg-rtg2	INDEL	I6_15	map_l100_m2_e1	*	95.9641	92.2414	100.0000	82.3328	107	9	103	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge