PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
76001-76050 / 86044 show all | |||||||||||||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7101 | 99.4220 | 100.0000 | 73.1707 | 344 | 2 | 341 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.5414 | 91.4634 | 100.0000 | 66.2100 | 75 | 7 | 74 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 72.8261 | 23 | 4 | 25 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6891 | 99.3802 | 100.0000 | 59.1393 | 962 | 6 | 959 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9910 | 1 | 0 | 1 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 2 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 37.1429 | 21 | 2 | 22 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 9 | 0 | 10 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.9759 | 88.6364 | 100.0000 | 93.3227 | 39 | 5 | 42 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.9759 | 88.6364 | 100.0000 | 93.8053 | 39 | 5 | 42 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.7591 | 40 | 5 | 43 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3822 | 4 | 0 | 5 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4654 | 17 | 0 | 19 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7627 | 18 | 1 | 20 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7983 | 18 | 1 | 20 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 3 | 0 | 4 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2481 | 98.5075 | 100.0000 | 83.5476 | 66 | 1 | 64 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7320 | 9 | 0 | 10 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1591 | 9 | 0 | 10 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9274 | 10 | 0 | 11 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1860 | 9 | 0 | 10 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9011 | 2 | 0 | 2 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8506 | 97.7273 | 100.0000 | 91.7625 | 43 | 1 | 43 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0868 | 2 | 0 | 2 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.8764 | 97.7778 | 100.0000 | 93.0599 | 44 | 1 | 44 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0991 | 2 | 0 | 2 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9011 | 97.8261 | 100.0000 | 93.1087 | 45 | 1 | 45 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ltrigg-rtg2 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 33.3333 | 42 | 1 | 42 | 0 | 0 |