PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7351-7400 / 86044 show all
gduggal-snapfbINDELD1_5map_l100_m2_e0hetalt
75.3138
62.5000
94.7368
94.7368
30181811
100.0000
gduggal-snapfbINDELD1_5map_l100_m2_e1hetalt
72.5806
58.8235
94.7368
94.8087
30211811
100.0000
gduggal-snapfbINDELD1_5map_l150_m0_e0homalt
97.0553
96.4706
97.6471
94.1661
8238322
100.0000
gduggal-snapfbINDELD1_5tech_badpromoters*
91.8919
89.4737
94.4444
57.1429
1721711
100.0000
gduggal-snapfbINDELD1_5tech_badpromotershomalt
94.7368
100.0000
90.0000
47.3684
90911
100.0000
gduggal-snapfbINDELD6_15func_cds*
82.0513
74.4186
91.4286
43.5484
32113233
100.0000
gduggal-snapfbINDELD6_15func_cdshet
83.8269
79.3103
88.8889
40.0000
2362433
100.0000
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.7902
69.7674
52.3096
34.3980
420182419382382
100.0000
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
79.1493
72.0787
87.7579
53.3974
491019026388989
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
57.9710
51.2821
66.6667
62.5000
2019422
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
57.1429
46.5116
74.0741
65.8228
20232077
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
53.1306
49.0909
57.8947
66.0714
27281188
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
51.0251
48.4848
53.8462
69.0476
1617766
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
58.9966
69.7941
51.0924
33.9623
305132304291291
100.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
83.1109
76.3884
91.1308
38.7228
415412844114040
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
81.1499
74.3504
89.3182
33.8346
354812243934747
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
50.0921
84.4720
35.6021
27.7883
13625136246246
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
86.5961
80.0752
94.2731
78.2359
213532141313
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
88.1961
82.5806
94.6309
78.0882
1282714188
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
69.4006
59.4595
83.3333
67.5676
22151022
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
90.0000
85.1351
95.4545
79.7546
63116333
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
61.1189
45.6140
92.5926
99.6543
26312522
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
66.6667
66.6667
66.6667
99.8717
42422
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
71.4799
62.8596
82.8402
34.4961
7434391402929
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
83.0586
77.6471
89.2809
34.5471
6601906587979
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
51.6683
38.0989
80.2508
24.4970
501814512126126
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
43.0800
29.0909
82.9861
28.5360
962342394949
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
50.2318
34.6784
91.0828
15.1351
2755181431414
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
67.5325
67.7083
67.3575
24.9027
130621306363
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
85.9762
77.6671
96.2761
24.1736
54615710604141
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
85.2592
83.7329
86.8421
25.4902
48995661010
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
64.3676
52.1127
84.1584
21.7054
7468851616
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
38.8186
25.0000
86.7925
22.0588
6184677
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
66.7366
54.6392
85.7143
3.4483
53442444
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
73.1707
71.4286
75.0000
37.5000
1561555
100.0000
gduggal-snapfbINDELD6_15map_l100_m0_e0*
80.2812
68.9320
96.1039
84.6307
71327433
100.0000
gduggal-snapfbINDELD6_15map_l100_m0_e0het
85.0633
75.0000
98.2456
77.4704
45155611
100.0000
gduggal-snapfbINDELD6_15map_l100_m0_e0homalt
79.0698
70.8333
89.4737
91.9831
1771722
100.0000
gduggal-snapfbINDELD6_15map_l100_m1_e0hetalt
60.2673
45.5882
88.8889
73.5294
3137811
100.0000
gduggal-snapfbINDELD6_15map_l100_m1_e0homalt
81.7391
73.4375
92.1569
88.6414
47174744
100.0000
gduggal-snapfbINDELD6_15map_l100_m2_e0hetalt
60.2673
45.5882
88.8889
73.5294
3137811
100.0000
gduggal-snapfbINDELD6_15map_l100_m2_e0homalt
82.0513
73.8462
92.3077
88.7931
48174844
100.0000
gduggal-snapfbINDELD6_15map_l100_m2_e1hetalt
58.9560
43.8356
90.0000
72.9730
3241911
100.0000
gduggal-snapfbINDELD6_15map_l100_m2_e1homalt
81.6667
73.1343
92.4528
88.7712
49184944
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0*
79.6826
70.2128
92.1053
89.7849
33143533
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0het
80.3709
68.9655
96.2963
85.1648
2092611
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0homalt
78.2609
75.0000
81.8182
93.9891
93922
100.0000
gduggal-snapfbINDELD6_15map_l125_m1_e0homalt
80.6452
73.5294
89.2857
90.8497
2592533
100.0000
gduggal-snapfbINDELD6_15map_l125_m2_e0homalt
81.8182
75.0000
90.0000
90.5660
2792733
100.0000
gduggal-snapfbINDELD6_15map_l125_m2_e1homalt
82.3529
75.6757
90.3226
90.4615
2892833
100.0000