PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73351-73400 / 86044 show all
cchapple-customINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.7742
20200
cchapple-customINDELD6_15map_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
94.3820
50500
cchapple-customINDELD6_15map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
94.2308
60600
cchapple-customINDELD6_15map_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
94.4444
60600
cchapple-customINDELD6_15map_sirenhetalt
0.0000
86.8687
0.0000
0.0000
8613000
cchapple-customINDELD6_15segduphet
98.3425
96.7391
100.0000
93.1979
89314400
cchapple-customINDELD6_15segduphetalt
0.0000
89.7959
0.0000
0.0000
445000
cchapple-customINDELD6_15segdupwithalt*
0.0000
100.0000
00000
cchapple-customINDELD6_15segdupwithalthet
0.0000
100.0000
00000
cchapple-customINDELD6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
cchapple-customINDELD6_15tech_badpromoters*
100.0000
100.0000
100.0000
52.7778
1701700
cchapple-customINDELD6_15tech_badpromotershet
100.0000
100.0000
100.0000
54.1667
1001100
cchapple-customINDELD6_15tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
50.0000
60600
cchapple-customINDELI16_PLUS*hetalt
0.0000
92.6120
0.0000
0.0000
1943155000
cchapple-customINDELI16_PLUSHG002complexvarhetalt
0.0000
91.9403
0.0000
0.0000
30827000
cchapple-customINDELI16_PLUSHG002compoundhethetalt
0.0000
92.6421
0.0000
0.0000
1939154000
cchapple-customINDELI16_PLUSdecoy*
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSdecoyhet
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSdecoyhomalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSfunc_cds*
95.6522
91.6667
100.0000
75.5556
1111100
cchapple-customINDELI16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
68.9655
90900
cchapple-customINDELI16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
01000
cchapple-customINDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
87.5000
20200
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
88.3721
0.0000
0.0000
7610000
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
96.0549
0.0000
0.0000
56023000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
94.8407
0.0000
0.0000
62534000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
180000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
88.7850
2402400
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7183
99.4382
100.0000
80.1743
177118200
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5349
99.0741
100.0000
79.9728
107114700
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
350000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
80.9783
3503500
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
100.0000
100.0000
100.0000
74.7222
8909100
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
73.1183
5307500
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
80.2469
1601600