PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72051-72100 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9687 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9776 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8478 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9339 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.4359 | 95.0000 | 100.0000 | 99.4237 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4513 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 88.8889 | 80.0000 | 100.0000 | 99.6105 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2907 | 87.4251 | 100.0000 | 68.5535 | 146 | 21 | 150 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4940 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5206 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7003 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 93.3333 | 87.5000 | 100.0000 | 99.8894 | 14 | 2 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.1193 | 94.4000 | 100.0000 | 27.2727 | 118 | 7 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | map_l100_m0_e0 | hetalt | 93.5484 | 87.8788 | 100.0000 | 90.0662 | 29 | 4 | 30 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m1_e0 | hetalt | 94.4681 | 89.5161 | 100.0000 | 85.7143 | 111 | 13 | 112 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e0 | hetalt | 94.5148 | 89.6000 | 100.0000 | 86.6040 | 112 | 13 | 114 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | hetalt | 94.4000 | 89.3939 | 100.0000 | 86.3481 | 118 | 14 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 95.2128 | 9 | 2 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.2049 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 92.9119 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.0057 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m1_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.9555 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 95.6410 | 17 | 4 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l150_m2_e1 | hetalt | 87.8049 | 78.2609 | 100.0000 | 95.4774 | 18 | 5 | 18 | 0 | 0 | ||