PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
7151-7200 / 86044 show all
ckim-dragenINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
92.9134
100.0000
86.7647
77.6316
5905999
100.0000
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.4894
95.1923
99.9000
43.6220
2970150299833
100.0000
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.3094
99.6937
95.0365
73.7548
65126513434
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0392
94.3279
99.9110
42.3116
3326200336633
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.6301
100.0000
97.2973
70.8661
3603611
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4595
100.0000
98.9247
70.5696
9209211
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3797
99.1736
99.5868
69.7500
240224111
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.2701
100.0000
98.5507
70.7627
6806811
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.6860
91.4179
98.1964
63.3358
4904649099
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.5748
95.9732
99.2308
77.4697
143612911
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
85.7143
100.0000
75.0000
78.9474
2402488
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8891
94.9885
98.8674
52.9255
331717533173838
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.8351
98.1132
99.5677
73.2460
7281469133
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6886
93.6983
99.8760
34.6569
2379160241633
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.7152
99.5261
86.7769
70.8785
21012103232
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.2521
95.5720
98.9924
51.2038
284913228492929
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.9917
98.3416
99.6503
72.5659
5931057022
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0913
94.4749
99.8568
32.8741
2069121209233
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.7343
99.4681
88.6256
69.5087
18711872424
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6831
93.6838
99.8808
36.3590
2477167251433
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.8012
99.6785
90.3790
71.4642
31013103333
100.0000
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0392
94.3279
99.9110
42.3116
3326200336633
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1287
94.5229
99.8822
39.6374
167497169622
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
96.5300
100.0000
93.2927
78.6736
15301531111
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
82.2785
70.6522
98.4848
62.0690
65276511
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
80.9217
68.6747
98.4848
30.5263
57266511
100.0000
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3982
99.5370
97.2851
67.4041
215121566
100.0000
ckim-dragenSNP*HG002complexvarhomalt
99.9551
99.9245
99.9858
19.8995
2883562182885654141
100.0000
ckim-dragenSNP*HG002compoundhethomalt
99.8656
99.8980
99.8332
35.0217
1077111107711818
100.0000
ckim-dragenSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8935
99.8416
99.9455
56.0535
2016732201781111
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9697
100.0000
94.1176
90.5556
1501611
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.0605
98.2598
99.8745
43.2288
158128159122
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2924
99.2063
99.3785
88.6959
17501417591111
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.3235
99.1976
99.4496
87.1665
23491923491313
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3723
99.3395
99.4052
88.3238
150410150499
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2348
98.9437
99.5277
84.3986
843984344
100.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9697
100.0000
94.1176
90.5556
1501611
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7101
99.5369
99.8839
62.7379
343916344244
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_51to200het
90.1961
85.1852
95.8333
97.7941
2342311
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9425
99.9507
99.9343
54.5644
60853608844
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8538
99.7443
99.9634
29.9590
27317273211
100.0000
ckim-dragenSNP*segduphetalt
93.3333
100.0000
87.5000
97.7716
70711
100.0000
ckim-dragenSNP*segduphomalt
99.9022
99.8790
99.9255
87.7402
10730131073088
100.0000
ckim-dragenSNP*tech_badpromoters*
98.0769
97.4522
98.7097
43.8406
153415322
100.0000
ckim-dragenSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.4026
7917922
100.0000
ckim-dragenSNPti*hetalt
99.1507
99.8282
98.4823
48.3899
581158499
100.0000
ckim-dragenSNPtiHG002complexvarhomalt
99.9527
99.9214
99.9840
18.3095
1933111521934173131
100.0000
ckim-dragenSNPtiHG002compoundhethomalt
99.8648
99.9053
99.8243
30.4352
7387773881313
100.0000
ckim-dragenSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
98.8879
97.9575
99.8361
58.2906
119925121822
100.0000