PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70851-70900 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | homalt | 98.4215 | 96.8921 | 100.0000 | 65.2969 | 5830 | 187 | 5827 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | homalt | 98.4366 | 96.9213 | 100.0000 | 65.3352 | 5887 | 187 | 5884 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m0_e0 | homalt | 97.4517 | 95.0301 | 100.0000 | 73.1873 | 1262 | 66 | 1261 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m1_e0 | homalt | 98.3252 | 96.7055 | 100.0000 | 67.0155 | 3816 | 130 | 3814 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e0 | homalt | 98.3317 | 96.7181 | 100.0000 | 69.7502 | 3949 | 134 | 3947 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 20 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l150_m2_e1 | homalt | 98.3526 | 96.7586 | 100.0000 | 69.7328 | 4000 | 134 | 3998 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | map_l250_m0_e0 | homalt | 97.0667 | 94.3005 | 100.0000 | 91.7009 | 182 | 11 | 182 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m1_e0 | homalt | 97.8520 | 95.7944 | 100.0000 | 84.1085 | 820 | 36 | 820 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e0 | homalt | 97.9858 | 96.0512 | 100.0000 | 85.3349 | 900 | 37 | 900 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l250_m2_e1 | homalt | 98.0054 | 96.0888 | 100.0000 | 85.4327 | 909 | 37 | 909 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | * | hetalt | 0.0000 | 3.4156 | 0.0000 | 0.0000 | 862 | 24375 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 5.8394 | 0.0000 | 0.0000 | 216 | 3483 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 3.4114 | 0.0000 | 0.0000 | 859 | 24321 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9611 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.6088 | 0.0000 | 0.0000 | 138 | 3686 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.2940 | 0.0000 | 0.0000 | 662 | 14755 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 4.0108 | 0.0000 | 0.0000 | 670 | 16035 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 6.5868 | 0.0000 | 0.0000 | 11 | 156 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 5.1502 | 0.0000 | 0.0000 | 12 | 221 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.7879 | 0.0000 | 0.0000 | 5 | 127 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.9747 | 0.0000 | 0.0000 | 81 | 2642 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.0395 | 0.0000 | 0.0000 | 556 | 13208 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.2864 | 0.0000 | 0.0000 | 476 | 10629 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.0479 | 0.0000 | 0.0000 | 568 | 13464 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 4.0108 | 0.0000 | 0.0000 | 670 | 16035 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.5442 | 0.0000 | 0.0000 | 476 | 9999 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.0735 | 0.0000 | 0.0000 | 51 | 1201 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.4206 | 0.0000 | 0.0000 | 29 | 506 | 0 | 0 | 0 | ||