PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1392 1393 1394 1395 1396 1397 1398 1399 1400 ... 1720 1721 » 69751-69800 / 86044 show all
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	80.0000	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8976	99.7954	100.0000	42.8240	1463	3	1478	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	75.0000	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9417	99.8834	100.0000	46.3975	857	1	863	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.7778	95.6522	100.0000	89.8462	66	3	66	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	93.3333	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.8571	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	92.5926	2	0	2	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	93.7500	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_51to200	homalt	90.9091	83.3333	100.0000	97.0930	5	1	5	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	80.0000	2	0	2	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	90.5618	33	2	42	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	91.9192	8	0	8	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	91.6667	6	0	6	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	92.5926	2	0	2	0	0
ckim-dragen	SNP	ti	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	74.5455	14	0	14	0	0
ckim-dragen	SNP	ti	map_l100_m1_e0	hetalt	100.0000	100.0000	100.0000	76.0331	29	0	29	0	0
ckim-dragen	SNP	ti	map_l100_m2_e0	hetalt	100.0000	100.0000	100.0000	77.9412	30	0	30	0	0
ckim-dragen	SNP	ti	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	77.3723	31	0	31	0	0
ckim-dragen	SNP	ti	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	81.3953	8	0	8	0	0
ckim-dragen	SNP	ti	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	75.0000	24	0	24	0	0
ckim-dragen	SNP	ti	map_l125_m2_e0	hetalt	100.0000	100.0000	100.0000	78.5714	24	0	24	0	0
ckim-dragen	SNP	ti	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	78.5714	24	0	24	0	0
ckim-dragen	SNP	ti	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	91.4286	3	0	3	0	0
ckim-dragen	SNP	ti	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	80.7692	15	0	15	0	0
ckim-dragen	SNP	ti	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	83.1461	15	0	15	0	0
ckim-dragen	SNP	ti	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	83.1461	15	0	15	0	0
ckim-dragen	SNP	ti	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	91.4894	4	0	4	0	0
ckim-dragen	SNP	ti	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	90.5660	5	0	5	0	0
ckim-dragen	SNP	ti	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	90.5660	5	0	5	0	0
ckim-dragen	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge