PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69551-69600 / 86044 show all | |||||||||||||||
ckim-dragen | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.0000 | 22 | 0 | 22 | 0 | 0 | ||
ckim-dragen | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 8 | 0 | 8 | 0 | 0 | ||
ckim-dragen | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
ckim-dragen | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 59.3750 | 13 | 0 | 13 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | HG002complexvar | hetalt | 96.4437 | 93.1316 | 100.0000 | 55.3409 | 1139 | 84 | 1179 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 24 | 0 | 24 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.4643 | 51 | 10 | 51 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 72.0824 | 122 | 0 | 122 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 59.8425 | 50 | 2 | 51 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1691 | 88.9807 | 100.0000 | 46.6772 | 323 | 40 | 337 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 100.0000 | 8 | 1 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.9241 | 152 | 3 | 153 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 86.8534 | 60 | 2 | 61 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8506 | 97.7273 | 100.0000 | 74.7059 | 43 | 1 | 43 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.2977 | 49 | 0 | 49 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8634 | 2 | 0 | 2 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.3464 | 2 | 0 | 2 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4152 | 96.8799 | 100.0000 | 43.4270 | 621 | 20 | 624 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9529 | 94.0860 | 100.0000 | 70.5882 | 175 | 11 | 175 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 90.8425 | 32 | 3 | 25 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2789 | 94.7020 | 100.0000 | 48.0969 | 143 | 8 | 150 | 0 | 0 | ||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 |