PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1381 1382 1383 1384 1385 1386 1387 1388 1389 ... 1720 1721 » 69201-69250 / 86044 show all
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.5559	460	2	460	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	38.6814	1330	0	1330	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.7447	91.8367	100.0000	29.6875	45	4	45	0	0
hfeng-pmm2	INDEL	D1_5	map_l100_m0_e0	hetalt	92.3077	85.7143	100.0000	94.1176	12	2	12	0	0
hfeng-pmm2	INDEL	D1_5	map_l100_m1_e0	hetalt	95.5556	91.4894	100.0000	90.8898	43	4	43	0	0
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e0	hetalt	95.6522	91.6667	100.0000	91.1417	44	4	45	0	0
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	hetalt	95.9184	92.1569	100.0000	90.8046	47	4	48	0	0
hfeng-pmm2	INDEL	D1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	97.8102	3	0	3	0	0
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	hetalt	96.0000	92.3077	100.0000	95.9044	12	1	12	0	0
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	95.8457	14	1	14	0	0
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	95.9420	14	1	14	0	0
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	98.1308	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	map_l150_m1_e0	hetalt	92.3077	85.7143	100.0000	97.4249	6	1	6	0	0
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	hetalt	92.3077	85.7143	100.0000	97.7186	6	1	6	0	0
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	hetalt	93.3333	87.5000	100.0000	97.4074	7	1	7	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	96.9048	13	0	13	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	97.6744	3	0	3	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m1_e0	homalt	99.1150	98.2456	100.0000	93.4884	56	1	56	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.0769	3	0	3	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e0	homalt	99.1597	98.3333	100.0000	94.0524	59	1	59	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.1250	3	0	3	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m2_e1	homalt	99.1597	98.3333	100.0000	94.2326	59	1	59	0	0
hfeng-pmm2	INDEL	D1_5	map_siren	hetalt	96.2963	92.8571	100.0000	91.0138	78	6	78	0	0
hfeng-pmm2	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6780	50	2	51	0	0
hfeng-pmm2	INDEL	D1_5	segdup	homalt	100.0000	100.0000	100.0000	94.1176	359	0	359	0	0
hfeng-pmm2	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9940	1	0	1	0	0
hfeng-pmm2	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9909	1	0	1	0	0
hfeng-pmm2	INDEL	D1_5	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D1_5	tech_badpromoters	*	97.2973	94.7368	100.0000	48.5714	18	1	18	0	0
hfeng-pmm2	INDEL	D1_5	tech_badpromoters	het	93.3333	87.5000	100.0000	58.8235	7	1	7	0	0
hfeng-pmm2	INDEL	D1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	43.7500	9	0	9	0	0
hfeng-pmm2	INDEL	D6_15	decoy	*	100.0000	100.0000	100.0000	99.9024	1	0	1	0	0
hfeng-pmm2	INDEL	D6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D6_15	decoy	hetalt	100.0000	100.0000	100.0000	99.1379	1	0	1	0	0
hfeng-pmm2	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	*	100.0000	100.0000	100.0000	53.7634	43	0	43	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	het	100.0000	100.0000	100.0000	50.0000	29	0	29	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	func_cds	homalt	100.0000	100.0000	100.0000	60.0000	12	0	12	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	96.4912	6	0	6	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.2727	3	0	3	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	90.0000	2	0	2	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	97.5610	1	0	1	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	60.9756	32	7	32	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	76.6304	43	0	43	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	97.2973	4	0	4	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	97.9381	2	0	2	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge