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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
6801-6850 / 86044 show all
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1540
92.9308
99.6088
28.2869
12791973129855151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8922
94.2909
99.6412
27.0291
10471634105533838
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2854
93.2411
99.5352
28.3262
976770898504646
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.5183
78.0351
99.6251
29.7101
977275106344
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.8310
87.1028
99.3658
71.0526
4666947033
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.2092
94.7800
99.7663
39.0116
2542140256166
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7955
94.3933
99.3232
30.5115
112867117488
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
98.4617
97.0748
99.8889
26.7101
8962789911
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8839
99.9535
99.8144
47.5030
21511215144
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.6296
4704722
100.0000
ckim-gatkINDEL*map_l150_m0_e0homalt
98.7879
99.3902
98.1928
91.6917
163116333
100.0000
ckim-gatkINDEL*map_l250_m0_e0homalt
96.0000
96.0000
96.0000
97.7085
2412411
100.0000
ckim-gatkINDEL*map_l250_m1_e0homalt
98.1651
98.1651
98.1651
95.2464
107210722
100.0000
ckim-gatkINDEL*map_l250_m2_e0homalt
98.2609
98.2609
98.2609
95.6538
113211322
100.0000
ckim-gatkINDEL*map_l250_m2_e1homalt
98.2759
98.2759
98.2759
95.7196
114211422
100.0000
ckim-gatkINDELD16_PLUS*hetalt
96.6957
94.2059
99.3207
38.1824
182111220471414
100.0000
ckim-gatkINDELD16_PLUSHG002complexvarhetalt
93.2896
89.8785
96.9697
47.4403
222254481414
100.0000
ckim-gatkINDELD16_PLUSHG002compoundhethetalt
96.8969
94.3465
99.5891
25.8850
1819109193988
100.0000
ckim-gatkINDELD16_PLUSHG002compoundhethomalt
44.4444
100.0000
28.5714
72.5490
8082020
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.2725
91.6923
99.1437
39.7362
89481104299
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8234
96.2133
99.4883
36.4312
124549136177
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7101
100.0000
99.4220
81.3578
172017211
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.7052
90.8178
98.9404
37.4482
6336474788
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5196
93.9394
99.2455
33.2429
15199817101313
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8135
96.1864
99.4965
31.6116
9083698855
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3534
99.7835
98.9270
64.3185
461146155
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4603
93.8144
99.2597
35.4174
154710217431313
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7195
94.2517
99.3201
38.1124
182011120451414
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.7528
96.0459
99.5215
32.8514
7533183244
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3540
87.6993
99.7881
34.6260
3855447111
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
98.1793
97.2561
99.1202
37.6600
319933833
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7378
94.8571
98.6945
34.1924
3321837855
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
98.0583
99.0196
97.1154
64.3836
101110133
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
94.5055
93.4783
95.5556
67.1533
4334322
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
77.4194
75.0000
80.0000
92.1875
62411
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
50.0000
1301311
100.0000
ckim-gatkINDELD16_PLUSsegduphomalt
96.0000
100.0000
92.3077
96.5699
1201211
100.0000
ckim-gatkINDELD1_5*hetalt
96.5155
93.6554
99.5558
62.7234
959565096374343
100.0000
ckim-gatkINDELD1_5HG002complexvarhetalt
92.5788
88.8314
96.6563
72.4212
120115112434343
100.0000
ckim-gatkINDELD1_5HG002compoundhethetalt
96.5709
93.7255
99.5943
58.2762
957564195753939
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
93.3918
87.9802
99.5128
30.5121
1603219163488
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1124
94.7719
99.5714
64.0050
881048688293838
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6722
93.9296
99.5798
30.8791
872756487693737
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8372
98.8372
98.8372
63.5593
255325533
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.1049
91.8919
98.5507
79.7654
6866811
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7250
99.6337
99.8165
78.0419
544254411
100.0000