PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6701-6750 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1864 | 99.4416 | 98.9325 | 66.4187 | 3740 | 21 | 3707 | 40 | 40 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6628 | 98.4043 | 98.9228 | 61.2656 | 555 | 9 | 551 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 89.4961 | 81.4815 | 99.2593 | 43.5146 | 22 | 5 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2719 | 98.7603 | 99.7888 | 58.8261 | 956 | 12 | 945 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8761 | 99.2488 | 98.5061 | 62.8641 | 1057 | 8 | 1055 | 16 | 16 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2452 | 99.2509 | 99.2395 | 60.2118 | 265 | 2 | 261 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 88.0000 | 95.6522 | 52.0833 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | het | 50.0000 | 37.5000 | 75.0000 | 50.0000 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 63.1579 | 50.0000 | 85.7143 | 95.7055 | 6 | 6 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.9459 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 66.6667 | 51.8519 | 93.3333 | 94.5652 | 14 | 13 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 66.6667 | 51.8519 | 93.3333 | 94.9495 | 14 | 13 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5517 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 65.1163 | 50.0000 | 93.3333 | 95.0000 | 14 | 14 | 14 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.5753 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 60.8696 | 46.6667 | 87.5000 | 96.0784 | 7 | 8 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.9247 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 61.5385 | 47.0588 | 88.8889 | 95.9641 | 8 | 9 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0099 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.0291 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 98.3740 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 98.2456 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 50.0000 | 40.0000 | 66.6667 | 97.8102 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7213 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 50.0000 | 40.0000 | 66.6667 | 97.8723 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7742 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 99.3671 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | homalt | 88.8889 | 88.8889 | 88.8889 | 50.0000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9010 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D6_15 | decoy | homalt | 0.0000 | 0.0000 | 99.6656 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D6_15 | func_cds | homalt | 91.6667 | 91.6667 | 91.6667 | 58.6207 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 66.6667 | 66.6667 | 98.1132 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.0263 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 94.1176 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.1213 | 27.4648 | 38.6792 | 40.1130 | 39 | 103 | 41 | 65 | 65 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.2151 | 70.8333 | 62.1622 | 50.0000 | 17 | 7 | 23 | 14 | 14 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.0000 | 85.7143 | 26.0870 | 33.0097 | 18 | 3 | 18 | 51 | 51 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5000 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5410 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |