PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
65001-65050 / 86044 show all
jlack-gatkINDELI6_15decoyhet
0.0000
100.0000
00000
jlack-gatkINDELI6_15decoyhetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15decoyhomalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15func_cdshet
100.0000
100.0000
100.0000
44.1860
2402400
jlack-gatkINDELI6_15func_cdshetalt
85.7143
75.0000
100.0000
40.0000
31300
jlack-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
87.0370
77.0492
100.0000
56.0748
47144700
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.7055
91.7647
100.0000
59.8985
7877900
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5885
99.1803
100.0000
71.7290
121112100
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
61.7188
4844900
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
99.0228
98.0645
100.0000
83.4056
152315300
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.1870
98.3871
100.0000
87.0021
6116200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
75.1479
4224200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.2464
4904900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8657
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4751
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.6856
95.4758
100.0000
43.1608
6122961500
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200het
95.5224
91.4286
100.0000
91.0394
3232500
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.2199
92.7152
100.0000
45.9559
1401114700
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
62.1795
5905900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200*
91.6667
84.6154
100.0000
70.2703
1121100
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
90.9091
83.3333
100.0000
38.8889
1021100
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l100_m0_e0hetalt
85.7143
75.0000
100.0000
93.0233
31300
jlack-gatkINDELI6_15map_l100_m0_e0homalt
100.0000
100.0000
100.0000
89.8305
1201200
jlack-gatkINDELI6_15map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
83.0508
2022000
jlack-gatkINDELI6_15map_l100_m2_e0hetalt
95.2381
90.9091
100.0000
84.6154
2022000