PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
63001-63050 / 86044 show all
ckim-isaacINDELC6_15map_l250_m2_e1het
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_l250_m2_e1hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_l250_m2_e1homalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_siren*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_sirenhet
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_sirenhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15map_sirenhomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segdup*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segduphet
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segduphetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segduphomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segdupwithalt*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segdupwithalthet
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segdupwithalthetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15segdupwithalthomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15tech_badpromoters*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15tech_badpromotershet
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
98.2405
60600
ckim-isaacINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
98.2063
40400
ckim-isaacINDELD16_PLUSdecoyhetalt
0.0000
100.0000
00000
ckim-isaacINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
96.4912
20200
ckim-isaacINDELD16_PLUSfunc_cds*
90.9091
83.3333
100.0000
56.5217
1021000
ckim-isaacINDELD16_PLUSfunc_cdshet
93.3333
87.5000
100.0000
61.1111
71700
ckim-isaacINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSfunc_cdshomalt
85.7143
75.0000
100.0000
40.0000
31300
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7742
22200
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7778
10100
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
83.3333
10100
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.7213
22200
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7778
10100
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
73.6842
1021500
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
90.4762
82.6087
100.0000
66.6667
1941900
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
80.7018
67.6471
100.0000
53.9474
69337000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
84.0909
72.5490
100.0000
42.6471
37143900
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
91.5663
84.4444
100.0000
50.0000
3873800
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
75.0000
60.0000
100.0000
36.0000
15101600
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
70.0000
53.8462
100.0000
41.6667
76700