PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
62451-62500 / 86044 show all | |||||||||||||||
egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 3 | 0 | 3 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 95.6000 | 11 | 2 | 11 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.4545 | 13 | 2 | 13 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6376 | 13 | 2 | 13 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 2 | 0 | 2 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5686 | 7 | 0 | 7 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9298 | 7 | 0 | 7 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6245 | 8 | 0 | 8 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.5709 | 12 | 1 | 12 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 3 | 0 | 3 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5491 | 55 | 2 | 55 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6923 | 3 | 0 | 3 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0554 | 58 | 2 | 58 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7941 | 3 | 0 | 3 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.2066 | 58 | 2 | 58 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 94.5201 | 358 | 1 | 358 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9935 | 1 | 0 | 1 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9896 | 1 | 0 | 1 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
egarrison-hhga | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 45.0980 | 28 | 1 | 28 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 12 | 0 | 12 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 98.1221 | 3 | 1 | 4 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.4026 | 2 | 0 | 4 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4348 | 67.2727 | 100.0000 | 66.0377 | 37 | 18 | 36 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 86.2069 | 75.7576 | 100.0000 | 59.3220 | 25 | 8 | 24 | 0 | 0 | ||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 68.0272 | 51.5464 | 100.0000 | 30.4348 | 50 | 47 | 48 | 0 | 0 |