PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
62451-62500 / 86044 show all
egarrison-hhgaINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.5000
30300
egarrison-hhgaINDELD1_5map_l125_m1_e0hetalt
91.6667
84.6154
100.0000
95.6000
1121100
egarrison-hhgaINDELD1_5map_l125_m2_e0hetalt
92.8571
86.6667
100.0000
95.4545
1321300
egarrison-hhgaINDELD1_5map_l125_m2_e1hetalt
92.8571
86.6667
100.0000
95.6376
1321300
egarrison-hhgaINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.8261
20200
egarrison-hhgaINDELD1_5map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
96.5686
70700
egarrison-hhgaINDELD1_5map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
96.9298
70700
egarrison-hhgaINDELD1_5map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
96.6245
80800
egarrison-hhgaINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
egarrison-hhgaINDELD1_5map_l250_m0_e0homalt
96.0000
92.3077
100.0000
97.5709
1211200
egarrison-hhgaINDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.2222
30300
egarrison-hhgaINDELD1_5map_l250_m1_e0homalt
98.2143
96.4912
100.0000
94.5491
5525500
egarrison-hhgaINDELD1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
97.6923
30300
egarrison-hhgaINDELD1_5map_l250_m2_e0homalt
98.3051
96.6667
100.0000
95.0554
5825800
egarrison-hhgaINDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.7941
30300
egarrison-hhgaINDELD1_5map_l250_m2_e1homalt
98.3051
96.6667
100.0000
95.2066
5825800
egarrison-hhgaINDELD1_5segduphomalt
99.8605
99.7214
100.0000
94.5201
358135800
egarrison-hhgaINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9935
10100
egarrison-hhgaINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9896
10100
egarrison-hhgaINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
egarrison-hhgaINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
egarrison-hhgaINDELD1_5tech_badpromotershetalt
66.6667
50.0000
100.0000
0.0000
11100
egarrison-hhgaINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
43.7500
90900
egarrison-hhgaINDELD6_15decoy*
0.0000
100.0000
01000
egarrison-hhgaINDELD6_15decoyhet
0.0000
100.0000
00000
egarrison-hhgaINDELD6_15decoyhetalt
0.0000
100.0000
01000
egarrison-hhgaINDELD6_15decoyhomalt
0.0000
100.0000
00000
egarrison-hhgaINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
egarrison-hhgaINDELD6_15func_cdshet
98.2456
96.5517
100.0000
45.0980
2812800
egarrison-hhgaINDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
egarrison-hhgaINDELD6_15func_cdshomalt
100.0000
100.0000
100.0000
63.6364
1201200
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
100.0000
11000
egarrison-hhgaINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
85.7143
75.0000
100.0000
98.1221
31400
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.4026
20400
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
50.0000
100.0000
11000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
80.4348
67.2727
100.0000
66.0377
37183600
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
86.2069
75.7576
100.0000
59.3220
2582400
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
68.0272
51.5464
100.0000
30.4348
50474800