PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6201-6250 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.7059 | 90.4494 | 99.3827 | 71.6783 | 161 | 17 | 161 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 69.4215 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.0000 | 91.6667 | 84.6154 | 79.0323 | 22 | 2 | 22 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1148 | 92.5561 | 99.9581 | 35.3992 | 2350 | 189 | 2386 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7729 | 93.7900 | 99.9519 | 33.6738 | 2054 | 136 | 2077 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0710 | 92.4735 | 99.9597 | 37.1168 | 2445 | 199 | 2481 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5539 | 93.3636 | 99.9700 | 43.1520 | 3292 | 234 | 3332 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5561 | 93.3936 | 99.9404 | 41.2198 | 1654 | 117 | 1676 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7691 | 100.0000 | 99.5392 | 64.2504 | 216 | 0 | 216 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6479 | 90.3226 | 99.4083 | 69.9288 | 168 | 18 | 168 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 91.0000 | 26 | 7 | 26 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | het | 83.8710 | 76.4706 | 92.8571 | 91.8129 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.2941 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | het | 93.8053 | 89.8305 | 98.1481 | 85.4839 | 53 | 6 | 53 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.3520 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 86.0349 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 86.7081 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 86.3747 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 95.0000 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m0_e0 | het | 66.6667 | 55.5556 | 83.3333 | 95.4887 | 5 | 4 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.9573 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | het | 89.2857 | 83.3333 | 96.1538 | 89.8833 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.1488 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | het | 89.2857 | 83.3333 | 96.1538 | 90.8451 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | het | 89.2857 | 83.3333 | 96.1538 | 91.0035 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.1326 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.4286 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | * | 89.3617 | 84.0000 | 95.4545 | 93.9726 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 93.8095 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | * | 89.3617 | 84.0000 | 95.4545 | 94.7115 | 21 | 4 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.3966 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.6636 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9583 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3871 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.6526 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.5806 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.4359 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.5709 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | * | 96.6443 | 94.4262 | 98.9691 | 82.7607 | 288 | 17 | 288 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 83.4254 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | * | * | hetalt | 99.8277 | 99.7704 | 99.8851 | 46.7890 | 869 | 2 | 869 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | HG002compoundhet | homalt | 99.8980 | 99.8887 | 99.9072 | 34.7339 | 10770 | 12 | 10770 | 10 | 10 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 92.7602 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |