PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
62051-62100 / 86044 show all
ckim-vqsrSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
54.9296
3213200
ckim-vqsrSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
dgrover-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9353
1001000
dgrover-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9433
60600
dgrover-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8390
10100
dgrover-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9297
30300
dgrover-gatkINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4334
1201200
dgrover-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.9388
30300
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
93.6306
88.0240
100.0000
68.6848
1472015000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.5045
1001000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.5517
30300
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.8102
30300
egarrison-hhgaINDELC1_5map_l100_m1_e0*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m1_e0het
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m1_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l100_m1_e0homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e0*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e0het
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e0homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e1*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e1het
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e1hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l100_m2_e1homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m0_e0*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m0_e0het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m0_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m0_e0homalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m1_e0*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m1_e0het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m1_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m1_e0homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e0*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e0het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e0homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e1*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e1het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e1hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l125_m2_e1homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l150_m0_e0*
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m0_e0het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m0_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m0_e0homalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m1_e0*
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l150_m1_e0het
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m1_e0hetalt
0.0000
0.0000
0.0000
00000
egarrison-hhgaINDELC1_5map_l150_m1_e0homalt
0.0000
100.0000
00000
egarrison-hhgaINDELC1_5map_l150_m2_e0*
0.0000
100.0000
00000