PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 120 121 122 123 124 125 126 127 128 ... 1720 1721 » 6151-6200 / 86044 show all
hfeng-pmm2	INDEL	D1_5	HG002compoundhet	homalt	89.0601	99.3127	80.7263	78.1840	289	2	289	69	69	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.9456	97.0745	96.8170	60.7087	730	22	730	24	24	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7580	99.7808	99.7353	72.9432	21851	48	21851	58	58	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.9157	96.0422	95.7895	59.7031	364	15	364	16	16	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.0240	99.1401	98.9082	42.6607	5073	44	5073	56	56	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2750	99.3899	99.1604	41.1634	4724	29	4724	40	40	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.1031	99.1903	99.0160	51.1670	5635	46	5635	56	56	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.2948	99.3780	99.2118	59.1033	8308	52	8308	66	66	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	82.1918	84.5070	80.0000	56.3953	60	11	60	15	15	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9312	99.9214	99.9410	54.0442	10170	8	10170	6	6	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8228	99.8636	99.7820	48.9282	3661	5	3661	8	8	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9848	98.9848	98.9848	56.8928	195	2	195	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	92.8571	100.0000	86.6667	55.8824	13	0	13	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m0_e0	homalt	99.4197	99.6124	99.2278	81.9638	257	1	257	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m1_e0	homalt	99.5773	99.4932	99.6616	80.9170	589	3	589	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e0	homalt	99.5905	99.5090	99.6721	81.7529	608	3	608	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l100_m2_e1	homalt	99.5964	99.5161	99.6769	81.8369	617	3	617	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m0_e0	homalt	98.9899	99.3243	98.6577	85.6868	147	1	147	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	84.6217	370	2	370	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	homalt	99.4152	100.0000	98.8372	89.0724	85	0	85	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m1_e0	homalt	99.3407	99.1228	99.5595	86.2424	226	2	226	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	87.0500	240	2	240	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	86.9679	246	2	246	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	78.7708	1164	4	1167	4	4	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.2379	87.4049	99.9050	31.0740	2068	298	2103	2	2	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.5075	97.3958	99.6448	66.8042	561	15	561	2	2	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.3814	98.9733	99.7930	65.0253	482	5	482	1	1	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9204	86.8267	99.9340	30.1521	1483	225	1514	1	1	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.2915	97.2540	93.4066	47.6410	425	12	425	30	30	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	84.8790	77.9848	93.1104	42.5160	921	260	919	68	68	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	74.0454	79.7297	69.1176	73.4893	118	30	94	42	42	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	85.5100	74.7706	99.8519	27.0270	652	220	674	1	1	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	89.6142	93.7888	85.7955	36.9176	151	10	151	25	25	100.0000
hfeng-pmm3	INDEL	I1_5	map_l250_m0_e0	*	95.8333	95.8333	95.8333	97.6967	23	1	23	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.0474	9	0	9	1	1	100.0000
hfeng-pmm3	INDEL	I1_5	map_l250_m1_e0	homalt	97.7778	100.0000	95.6522	92.9339	44	0	44	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	map_l250_m2_e0	homalt	97.8261	100.0000	95.7447	93.9666	45	0	45	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	map_l250_m2_e1	homalt	97.8723	100.0000	95.8333	94.0000	46	0	46	2	2	100.0000
hfeng-pmm3	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.3820	471	2	471	2	2	100.0000
hfeng-pmm3	INDEL	I6_15	*	hetalt	96.4340	93.1353	99.9750	38.6184	7964	587	8004	2	2	100.0000
hfeng-pmm3	INDEL	I6_15	HG002complexvar	*	98.1740	97.0367	99.3383	57.2224	4650	142	4654	31	31	100.0000
hfeng-pmm3	INDEL	I6_15	HG002complexvar	het	98.4917	97.0701	99.9556	58.8257	2286	69	2250	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	HG002complexvar	homalt	98.6971	99.8353	97.5845	54.9183	1212	2	1212	30	30	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.4426	96.6102	90.4762	76.4045	57	2	57	6	6	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.1835	94.5513	99.9664	44.3822	2950	170	2979	1	1	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.5539	93.3636	99.9700	43.1520	3292	234	3332	1	1	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge