PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
551-600 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8276 | 99.7048 | 99.9507 | 44.3071 | 4053 | 12 | 4053 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5691 | 68.1159 | 95.6522 | 67.8322 | 47 | 22 | 44 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5714 | 68.7500 | 91.6667 | 97.1223 | 11 | 5 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8662 | 81.0811 | 98.3051 | 80.6557 | 60 | 14 | 58 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6387 | 98.1030 | 99.1803 | 79.0977 | 362 | 7 | 363 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7732 | 97.1519 | 98.4026 | 72.3498 | 307 | 9 | 308 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5161 | 92.6267 | 98.5915 | 44.5312 | 201 | 16 | 210 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4104 | 94.8905 | 97.9798 | 71.8750 | 390 | 21 | 388 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.8054 | 92.7536 | 92.8571 | 88.0342 | 64 | 5 | 65 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6503 | 99.6503 | 99.6503 | 49.2608 | 855 | 3 | 855 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 2 | 2 | 100.0000 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1637 | 95.4315 | 96.9072 | 51.1335 | 188 | 9 | 188 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7270 | 99.6589 | 99.7951 | 46.6278 | 1461 | 5 | 1461 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2625 | 98.9379 | 99.5892 | 62.6573 | 1211 | 13 | 1212 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.2323 | 97.7636 | 98.7055 | 34.2553 | 306 | 7 | 305 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.0013 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | * | hetalt | 98.7952 | 98.6254 | 98.9655 | 47.9354 | 574 | 8 | 574 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | homalt | 99.3789 | 100.0000 | 98.7654 | 50.6098 | 80 | 0 | 80 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | segdup | homalt | 99.7258 | 99.8883 | 99.5639 | 88.9154 | 10731 | 12 | 10731 | 47 | 47 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 86.5876 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.1774 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | homalt | 99.3346 | 98.8595 | 99.8143 | 86.9517 | 2687 | 31 | 2687 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.6757 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | homalt | 99.3684 | 99.7886 | 98.9518 | 92.7375 | 472 | 1 | 472 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | homalt | 99.3266 | 98.8459 | 99.8120 | 86.8985 | 2655 | 31 | 2655 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 77.0270 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | homalt | 99.2653 | 98.7414 | 99.7948 | 85.6165 | 2432 | 31 | 2432 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.9011 | 98.6842 | 99.1189 | 87.0949 | 225 | 3 | 225 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.9648 | 98.7603 | 99.1701 | 87.9077 | 239 | 3 | 239 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7903 | 98.7903 | 98.7903 | 87.8491 | 245 | 3 | 245 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.2939 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 45.4545 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 47.0588 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |