PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5401-5450 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | ti | HG002complexvar | hetalt | 98.7893 | 98.5507 | 99.0291 | 39.5894 | 204 | 3 | 204 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | HG002compoundhet | homalt | 99.8918 | 99.8648 | 99.9188 | 30.3225 | 7384 | 10 | 7384 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5082 | 99.1830 | 99.8355 | 58.4841 | 1214 | 10 | 1214 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 86.0465 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7223 | 99.4893 | 99.9565 | 63.3985 | 11493 | 59 | 11493 | 5 | 5 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7338 | 99.6454 | 99.8224 | 41.5672 | 1124 | 4 | 1124 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9318 | 99.9318 | 99.9318 | 43.0237 | 1465 | 1 | 1465 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8636 | 97.9730 | 99.7706 | 84.0117 | 435 | 9 | 435 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4764 | 99.2167 | 99.7375 | 82.5868 | 380 | 3 | 380 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6683 | 99.4621 | 99.8754 | 72.2887 | 2404 | 13 | 2404 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7223 | 99.4893 | 99.9565 | 63.3985 | 11493 | 59 | 11493 | 5 | 5 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7031 | 99.4668 | 99.9405 | 63.6364 | 1679 | 9 | 1679 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 100.0000 | 99.8639 | 41.8470 | 2201 | 0 | 2201 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7835 | 89.1089 | 96.7742 | 93.3045 | 90 | 11 | 90 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0233 | 90.9091 | 95.2381 | 93.5252 | 60 | 6 | 60 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8949 | 99.9299 | 99.8599 | 26.8443 | 1426 | 1 | 1426 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 89.6552 | 92.8571 | 86.6667 | 82.5581 | 13 | 1 | 13 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 93.3333 | 96.5517 | 90.3226 | 82.1839 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 93.7500 | 96.7742 | 90.9091 | 83.1633 | 30 | 1 | 30 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 82.3529 | 87.5000 | 77.7778 | 87.5000 | 7 | 1 | 7 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 82.1429 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 84.9398 | 23 | 1 | 23 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 91.6667 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 86.0870 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 90.3226 | 93.3333 | 87.5000 | 87.8788 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 94.0476 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 94.0476 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_siren | hetalt | 94.8276 | 96.4912 | 93.2203 | 77.6515 | 55 | 2 | 55 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.9324 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | segdup | homalt | 99.8800 | 99.8135 | 99.9466 | 87.6556 | 7491 | 14 | 7491 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | HG002compoundhet | hetalt | 99.6512 | 99.4200 | 99.8834 | 22.4231 | 857 | 5 | 857 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 81.4286 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8910 | 99.8415 | 99.9405 | 60.8743 | 10081 | 16 | 10081 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.6673 | 99.4468 | 99.8889 | 71.7685 | 5393 | 30 | 5393 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9076 | 98.2249 | 99.6000 | 84.9034 | 498 | 9 | 498 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0354 | 98.5075 | 99.5690 | 83.8609 | 462 | 7 | 462 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5984 | 99.3324 | 99.8658 | 78.7628 | 1488 | 10 | 1488 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.6673 | 99.4468 | 99.8889 | 71.7685 | 5393 | 30 | 5393 | 6 | 6 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6881 | 99.4907 | 99.8864 | 60.3693 | 1758 | 9 | 1758 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3004 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.0093 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 90.9091 | 93.7500 | 88.2353 | 86.7188 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |