PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5351-5400 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9629 | 99.9555 | 99.9703 | 35.4085 | 6742 | 3 | 6742 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9269 | 99.8904 | 99.9635 | 30.9962 | 2735 | 3 | 2735 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | segdup | homalt | 99.8976 | 99.8790 | 99.9162 | 88.2042 | 10730 | 13 | 10730 | 9 | 9 | 100.0000 | |
| dgrover-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.6774 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | HG002complexvar | homalt | 99.9661 | 99.9447 | 99.9876 | 18.3249 | 193356 | 107 | 193346 | 24 | 24 | 100.0000 | |
| dgrover-gatk | SNP | ti | HG002compoundhet | homalt | 99.9121 | 99.9189 | 99.9053 | 30.4654 | 7388 | 6 | 7388 | 7 | 7 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5490 | 99.1830 | 99.9177 | 59.2008 | 1214 | 10 | 1214 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9554 | 99.9406 | 99.9703 | 49.4797 | 10096 | 6 | 10096 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7781 | 99.6454 | 99.9111 | 42.6020 | 1124 | 4 | 1124 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.2409 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0132 | 97.3684 | 98.6667 | 91.5636 | 148 | 4 | 148 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3818 | 99.2284 | 99.5356 | 87.4927 | 1286 | 10 | 1286 | 6 | 6 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.4131 | 99.5300 | 99.2966 | 88.5687 | 847 | 4 | 847 | 6 | 6 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5922 | 99.5471 | 99.6374 | 86.6820 | 1099 | 5 | 1099 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.5839 | 99.7222 | 99.4460 | 87.8981 | 718 | 2 | 718 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7720 | 99.5863 | 99.9585 | 73.0075 | 2407 | 10 | 2407 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.9457 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.6242 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.9024 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 27.1057 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | segdup | homalt | 99.9067 | 99.8534 | 99.9600 | 87.5169 | 7494 | 11 | 7494 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.5128 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 42.4658 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9009 | 99.8415 | 99.9603 | 61.7282 | 10081 | 16 | 10081 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8338 | 99.7050 | 99.9630 | 71.6940 | 5407 | 16 | 5407 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4856 | 99.3676 | 99.6038 | 88.3504 | 1257 | 8 | 1257 | 5 | 5 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4336 | 99.4962 | 99.3711 | 89.5036 | 790 | 4 | 790 | 5 | 5 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8338 | 99.7050 | 99.9630 | 71.6940 | 5407 | 16 | 5407 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3897 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.3783 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 89.5365 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |
| dgrover-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.8961 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9555 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 100.0000 | 87.5000 | 99.3504 | 12 | 0 | 14 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9619 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.4477 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5787 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 97.3214 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.9922 | 92.1495 | 98.0159 | 72.8155 | 493 | 42 | 494 | 10 | 10 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 80.0119 | 67.3889 | 98.4536 | 37.0811 | 622 | 301 | 573 | 9 | 9 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | segdup | hetalt | 85.5777 | 75.3846 | 98.9583 | 95.4264 | 98 | 32 | 95 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | segdup | homalt | 99.4792 | 99.4792 | 99.4792 | 93.5414 | 955 | 5 | 955 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 91.7481 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 98.2533 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | segdup | homalt | 99.8743 | 99.8418 | 99.9069 | 88.3916 | 10726 | 17 | 10726 | 10 | 10 | 100.0000 | |
| jlack-gatk | SNP | ti | * | hetalt | 98.8034 | 99.3127 | 98.2993 | 52.8846 | 578 | 4 | 578 | 10 | 10 | 100.0000 | |