PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 102 103 104 105 106 107 108 109 110 ... 1720 1721 » 5251-5300 / 86044 show all
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8372	98.8372	98.8372	63.5593	255	3	255	3	3	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	95.1049	91.8919	98.5507	79.7654	68	6	68	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	81.3717	1061	2	1061	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	95.8904	94.5946	97.2222	86.4151	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.3378	87.8389	99.5712	29.6743	1134	157	1161	5	5	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6223	93.7986	99.6213	24.3454	7593	502	7628	29	29	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.2095	94.9026	99.6314	23.5322	6479	348	6488	24	24	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.5969	93.7477	99.6247	26.3674	7662	511	7698	29	29	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.6665	93.9188	99.5798	30.8815	8726	565	8768	37	37	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8165	94.2782	99.4953	23.7106	6492	394	6505	33	33	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.7426	69	2	69	43	43	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.0580	91.2409	99.2084	70.5288	375	36	376	3	3	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9116	99.9214	99.9018	54.3272	10170	8	10170	10	10	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4732	97.1869	99.7941	31.3060	1451	42	1454	3	3	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9182	99.9454	99.8909	51.3011	3664	2	3664	4	4	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	97.8966	96.4615	99.3750	22.2357	627	23	636	4	4	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.9387	96.0088	99.9477	63.4628	5701	237	5737	3	3	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.8167	3533	4	3533	31	31	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5149	99.5000	97.5490	61.2167	199	1	199	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7912	100.0000	99.5833	76.0359	478	0	478	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8557	100.0000	99.7118	79.2588	346	0	346	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.1429	95.1220	83.8710	76.2755	78	4	78	15	15	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.0210	94.2544	99.9549	27.4378	4380	267	4433	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.4203	98.9214	95.9641	68.3987	642	7	642	27	27	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.6126	95.3835	99.9483	25.9281	3843	186	3869	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.9791	94.1744	99.9560	31.2217	4494	278	4547	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2368	99.3209	97.1761	73.3746	1170	8	1170	34	34	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3638	94.8948	99.9647	39.6673	5595	301	5656	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.7295	95.5848	99.9727	30.0745	3637	168	3661	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5587	100.0000	99.1213	72.9177	564	0	564	5	5	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	76.3337	62.0112	99.2593	29.3194	111	68	134	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	98.3979	97.1519	99.6764	72.8471	307	9	308	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8968	100.0000	99.7938	64.2462	968	0	968	2	2	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3928	99.9061	98.8848	68.5288	1064	1	1064	12	12	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	66.6667	100.0000	50.0000	98.3471	1	0	1	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.6666	99.6190	99.7143	62.5668	1046	4	1047	3	3	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6269	100.0000	99.2565	66.5423	267	0	267	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l150_m0_e0	homalt	98.5294	100.0000	97.1014	89.2188	67	0	67	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m0_e0	*	91.3043	87.5000	95.4545	98.3321	21	3	21	1	1	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.9231	9	0	9	1	1	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m1_e0	homalt	96.6292	97.7273	95.5556	94.3396	43	1	43	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m2_e0	homalt	96.7033	97.7778	95.6522	95.0749	44	1	44	2	2	100.0000
dgrover-gatk	INDEL	I1_5	map_l250_m2_e1	homalt	96.7742	97.8261	95.7447	95.1093	45	1	45	2	2	100.0000
dgrover-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8776	471	2	471	2	2	100.0000
dgrover-gatk	INDEL	I6_15	*	hetalt	96.6039	93.4744	99.9502	38.7907	7993	558	8034	4	4	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge