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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 100 101 102 103 104 105 106 107 108 ... 1720 1721 » 5151-5200 / 86044 show all
ckim-isaac	SNP	*	map_l250_m0_e0	homalt	60.9272	43.8792	99.6390	88.3516	276	353	276	1	1	100.0000
ckim-isaac	SNP	*	map_l250_m1_e0	homalt	58.8606	41.7377	99.8058	83.7974	1028	1435	1028	2	2	100.0000
ckim-isaac	SNP	*	map_l250_m2_e0	homalt	59.1933	42.0700	99.8233	85.8571	1130	1556	1130	2	2	100.0000
ckim-isaac	SNP	*	map_l250_m2_e1	homalt	59.3225	42.2001	99.8259	85.8515	1147	1571	1147	2	2	100.0000
ckim-isaac	SNP	*	map_siren	homalt	81.0505	68.1522	99.9707	46.5592	37590	17566	37591	11	11	100.0000
ckim-isaac	SNP	*	segdup	homalt	98.1370	96.3511	99.9903	85.3967	10351	392	10351	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.5644	93.4397	99.9052	38.7696	1054	74	1054	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	96.9804	94.2019	99.9277	38.3793	1381	85	1383	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.5553	95.3380	99.8782	41.5658	818	40	820	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.3541	87.9896	99.4152	75.0910	337	46	340	2	2	100.0000
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.3145	96.7288	99.9531	38.9223	2129	72	2130	1	1	100.0000
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	54.9020	40.0000	87.5000	88.3212	14	21	14	2	2	100.0000
ckim-isaac	SNP	ti	map_l100_m0_e0	homalt	69.6665	53.4731	99.9279	52.0793	4157	3617	4157	3	3	100.0000
ckim-isaac	SNP	ti	map_l100_m1_e0	homalt	75.0391	60.0668	99.9537	52.8051	10788	7172	10788	5	5	100.0000
ckim-isaac	SNP	ti	map_l100_m2_e0	homalt	75.4234	60.5604	99.9549	56.7558	11088	7221	11088	5	5	100.0000
ckim-isaac	SNP	ti	map_l100_m2_e1	homalt	75.4653	60.6143	99.9554	56.7172	11210	7284	11210	5	5	100.0000
ckim-isaac	SNP	ti	map_l125_m0_e0	homalt	65.7804	49.0314	99.9093	59.9855	2202	2289	2202	2	2	100.0000
ckim-isaac	SNP	ti	map_l125_m1_e0	homalt	68.7652	52.4129	99.9482	60.3233	5789	5256	5789	3	3	100.0000
ckim-isaac	SNP	ti	map_l125_m2_e0	homalt	69.3312	53.0727	99.9503	64.5277	6028	5330	6028	3	3	100.0000
ckim-isaac	SNP	ti	map_l125_m2_e1	homalt	69.3119	53.0546	99.9342	64.5595	6079	5379	6079	4	4	100.0000
ckim-isaac	SNP	ti	map_l150_m0_e0	homalt	64.3926	47.5190	99.8478	66.4710	1312	1449	1312	2	2	100.0000
ckim-isaac	SNP	ti	map_l150_m1_e0	homalt	65.1458	48.3281	99.9153	66.1412	3541	3786	3541	3	3	100.0000
ckim-isaac	SNP	ti	map_l150_m2_e0	homalt	65.7563	49.0021	99.9197	70.0457	3732	3884	3732	3	3	100.0000
ckim-isaac	SNP	ti	map_l150_m2_e1	homalt	65.7188	48.9666	99.8939	70.0833	3767	3926	3767	4	4	100.0000
ckim-isaac	SNP	ti	map_l250_m0_e0	homalt	62.5786	45.6422	99.5000	87.4451	199	237	199	1	1	100.0000
ckim-isaac	SNP	ti	map_l250_m1_e0	homalt	61.8884	44.8662	99.7234	82.9922	721	886	721	2	2	100.0000
ckim-isaac	SNP	ti	map_l250_m2_e0	homalt	62.2886	45.2830	99.7481	85.1339	792	957	792	2	2	100.0000
ckim-isaac	SNP	ti	map_l250_m2_e1	homalt	62.4273	45.4289	99.7522	85.0970	805	967	805	2	2	100.0000
ckim-isaac	SNP	ti	map_siren	homalt	82.7288	70.5560	99.9776	44.7961	26752	11164	26753	6	6	100.0000
ckim-isaac	SNP	tv	HG002compoundhet	homalt	88.3010	79.3093	99.5923	36.8889	2687	701	2687	11	11	100.0000
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.9538	82.0896	99.4845	75.5359	385	84	386	2	2	100.0000
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.8461	95.8323	99.9464	57.4072	3725	162	3727	2	2	100.0000
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	96.9007	94.0899	99.8846	27.3413	2595	163	2596	3	3	100.0000
ckim-isaac	SNP	tv	map_l100_m1_e0	homalt	68.8845	52.5489	99.9579	57.4205	4752	4291	4752	2	2	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e0	homalt	69.2951	53.0280	99.9591	61.2002	4886	4328	4886	2	2	100.0000
ckim-isaac	SNP	tv	map_l100_m2_e1	homalt	69.3075	53.0424	99.9595	61.1858	4934	4368	4934	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m1_e0	homalt	62.9734	45.9727	99.9258	63.6902	2694	3166	2694	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e0	homalt	63.4373	46.4683	99.9285	67.7501	2796	3221	2796	2	2	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e1	homalt	63.5067	46.5426	99.9293	67.7423	2827	3247	2827	2	2	100.0000
ckim-isaac	SNP	tv	map_l150_m1_e0	homalt	59.4623	42.3213	99.9402	68.6492	1670	2276	1670	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
ckim-isaac	SNP	tv	map_l150_m2_e1	homalt	60.1387	43.0092	99.9438	72.5081	1778	2356	1778	1	1	100.0000
ckim-isaac	SNP	tv	map_siren	homalt	77.1855	62.8654	99.9539	50.4637	10838	6402	10838	5	5	100.0000
ckim-isaac	SNP	tv	segdup	homalt	97.8395	95.7999	99.9678	86.9397	3102	136	3102	1	1	100.0000
ckim-vqsr	INDEL	*	HG002complexvar	hetalt	91.5318	85.7259	98.1813	66.4504	3171	528	3401	63	63	100.0000
ckim-vqsr	INDEL	*	HG002compoundhet	hetalt	95.5428	91.6720	99.7550	50.3140	23083	2097	23206	57	57	100.0000
ckim-vqsr	INDEL	*	func_cds	homalt	99.7792	100.0000	99.5595	39.4667	226	0	226	1	1	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.2704	87.7615	99.5173	36.9269	3356	468	3505	17	17	100.0000
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.3917	93.3580	99.6293	58.1709	14393	1024	14513	54	54	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.1302	92.8764	99.6203	36.5800	15515	1190	15743	60	60	100.0000

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