PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49951-50000 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.4959 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1651 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 98.1413 | 5 | 4 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.0909 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.3392 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.6102 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | * | 74.4186 | 59.2593 | 100.0000 | 97.3597 | 16 | 11 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.5904 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.2381 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | * | 72.7273 | 57.1429 | 100.0000 | 97.4026 | 16 | 12 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.6378 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.2381 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | * | 72.7273 | 57.1429 | 100.0000 | 98.4314 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | het | 72.7273 | 57.1429 | 100.0000 | 98.0952 | 4 | 3 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | * | 75.0000 | 60.0000 | 100.0000 | 97.8469 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | het | 72.7273 | 57.1429 | 100.0000 | 97.7077 | 8 | 6 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | * | 78.5714 | 64.7059 | 100.0000 | 97.5877 | 11 | 6 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | het | 76.9231 | 62.5000 | 100.0000 | 97.3890 | 10 | 6 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | * | 75.8621 | 61.1111 | 100.0000 | 97.6242 | 11 | 7 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | het | 76.9231 | 62.5000 | 100.0000 | 97.4293 | 10 | 6 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 50.0000 | 100.0000 | 99.1632 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.4872 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.5495 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | * | 75.0000 | 60.0000 | 100.0000 | 98.8971 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 99.5575 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | hetalt | 45.0000 | 29.0323 | 100.0000 | 94.0000 | 9 | 22 | 9 | 0 | 0 | ||