PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49901-49950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.8766 | 64.7541 | 80.7595 | 87.1336 | 316 | 172 | 319 | 76 | 1 | 1.3158 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | het | 95.1276 | 95.2855 | 94.9702 | 94.2264 | 1435 | 71 | 1435 | 76 | 1 | 1.3158 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.2619 | 97.2450 | 74.3373 | 66.4617 | 2612 | 74 | 2636 | 910 | 12 | 1.3187 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2808 | 99.8350 | 96.7742 | 42.6049 | 18153 | 30 | 18150 | 605 | 8 | 1.3223 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | het | 98.4895 | 98.7092 | 98.2707 | 77.9738 | 12847 | 168 | 12843 | 226 | 3 | 1.3274 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8791 | 98.9123 | 96.8672 | 42.4242 | 4638 | 51 | 4638 | 150 | 2 | 1.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 4.4684 | 35.0877 | 2.3861 | 92.1778 | 20 | 37 | 22 | 900 | 12 | 1.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 22.9777 | 16.1847 | 39.5973 | 75.5015 | 319 | 1652 | 295 | 450 | 6 | 1.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 22.9777 | 16.1847 | 39.5973 | 75.5015 | 319 | 1652 | 295 | 450 | 6 | 1.3333 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1348 | 99.8900 | 98.3909 | 39.6771 | 18163 | 20 | 18160 | 297 | 4 | 1.3468 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | het | 98.4890 | 98.6958 | 98.2832 | 77.8632 | 12713 | 168 | 12709 | 222 | 3 | 1.3514 | |
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | het | 81.0388 | 68.6740 | 98.8337 | 87.9988 | 12544 | 5722 | 12542 | 148 | 2 | 1.3514 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 53.7666 | 97.5737 | 37.1070 | 80.0383 | 6716 | 167 | 6880 | 11661 | 159 | 1.3635 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.8581 | 97.1203 | 80.2087 | 86.4645 | 8870 | 263 | 8916 | 2200 | 30 | 1.3636 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.8581 | 97.1203 | 80.2087 | 86.4645 | 8870 | 263 | 8916 | 2200 | 30 | 1.3636 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5695 | 96.6091 | 72.0927 | 44.6474 | 4530 | 159 | 4544 | 1759 | 24 | 1.3644 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 86.6794 | 93.1497 | 81.0496 | 83.5702 | 2502 | 184 | 2502 | 585 | 8 | 1.3675 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.6268 | 98.9870 | 98.2693 | 80.7168 | 4104 | 42 | 4145 | 73 | 1 | 1.3699 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0783 | 98.8658 | 97.3033 | 81.4881 | 2615 | 30 | 2634 | 73 | 1 | 1.3699 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4291 | 98.7026 | 98.1570 | 66.1366 | 3880 | 51 | 3888 | 73 | 1 | 1.3699 | |
| ghariani-varprowl | SNP | * | * | het | 99.0974 | 99.8581 | 98.3482 | 28.2380 | 1870907 | 2659 | 1871294 | 31430 | 431 | 1.3713 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7626 | 98.2992 | 82.5903 | 81.8415 | 19246 | 333 | 19322 | 4073 | 56 | 1.3749 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| ckim-vqsr | SNP | * | map_l150_m2_e1 | * | 66.6447 | 50.3105 | 98.6844 | 91.5888 | 16205 | 16005 | 16202 | 216 | 3 | 1.3889 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.5503 | 98.9154 | 92.4066 | 58.6255 | 11309 | 124 | 11354 | 933 | 13 | 1.3934 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.3834 | 97.8844 | 94.9277 | 48.0419 | 3979 | 86 | 4005 | 214 | 3 | 1.4019 | |
| ckim-gatk | SNP | ti | func_cds | * | 99.6887 | 99.8912 | 99.4870 | 29.0714 | 13772 | 15 | 13770 | 71 | 1 | 1.4085 | |
| ckim-gatk | SNP | ti | func_cds | het | 99.5548 | 99.9412 | 99.1713 | 33.6071 | 8499 | 5 | 8497 | 71 | 1 | 1.4085 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | * | 66.5265 | 50.1758 | 98.6845 | 91.5836 | 15982 | 15870 | 15979 | 213 | 3 | 1.4085 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3478 | 99.3571 | 99.3386 | 42.1628 | 10663 | 69 | 10663 | 71 | 1 | 1.4085 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2237 | 99.4958 | 98.9530 | 45.8387 | 6710 | 34 | 6710 | 71 | 1 | 1.4085 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 15.4909 | 90.1316 | 8.4736 | 78.2178 | 137 | 15 | 151 | 1631 | 23 | 1.4102 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.8331 | 93.3976 | 58.3587 | 78.4954 | 8530 | 603 | 8633 | 6160 | 87 | 1.4123 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 57.6740 | 98.5178 | 40.7711 | 77.3433 | 1994 | 30 | 2041 | 2965 | 42 | 1.4165 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 89.8366 | 96.6865 | 83.8931 | 79.2152 | 2597 | 89 | 2573 | 494 | 7 | 1.4170 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | het | 81.3082 | 69.1532 | 98.6474 | 89.1453 | 20497 | 9143 | 20494 | 281 | 4 | 1.4235 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.7849 | 97.2272 | 81.6917 | 72.6965 | 3822 | 109 | 3757 | 842 | 12 | 1.4252 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 61.3756 | 98.2368 | 44.6294 | 77.5231 | 4680 | 84 | 4745 | 5887 | 84 | 1.4269 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | het | 81.2064 | 69.0122 | 98.6348 | 89.1411 | 20233 | 9085 | 20230 | 280 | 4 | 1.4286 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 17.3977 | 88.6010 | 9.6459 | 80.7136 | 342 | 44 | 365 | 3419 | 49 | 1.4332 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 88.5779 | 97.0912 | 81.4371 | 71.0683 | 2470 | 74 | 2448 | 558 | 8 | 1.4337 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 81.3544 | 99.1233 | 68.9877 | 64.3634 | 3844 | 34 | 3864 | 1737 | 25 | 1.4393 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.2079 | 86.2903 | 35.4037 | 86.0546 | 107 | 17 | 114 | 208 | 3 | 1.4423 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4326 | 96.2516 | 80.0940 | 76.2162 | 3030 | 118 | 3066 | 762 | 11 | 1.4436 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | het | 99.0916 | 99.2132 | 98.9703 | 68.3138 | 46529 | 369 | 46518 | 484 | 7 | 1.4463 | |