PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49501-49550 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 91.3043 | 95.4545 | 87.5000 | 97.1188 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 91.3043 | 95.4545 | 87.5000 | 97.2125 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 74.2297 | 91 | 8 | 91 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.5974 | 93.6842 | 97.5904 | 90.6846 | 89 | 6 | 81 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1219 | 97.2222 | 99.0385 | 80.7050 | 105 | 3 | 103 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.8967 | 92.5926 | 95.2381 | 91.1392 | 25 | 2 | 20 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9540 | 90.2256 | 93.7500 | 86.9919 | 120 | 13 | 105 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.4755 | 89.6226 | 93.4066 | 86.1280 | 95 | 11 | 85 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9161 | 93.4959 | 96.3801 | 87.9826 | 230 | 16 | 213 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 92.5926 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.7742 | 100.0000 | 93.7500 | 86.3248 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.2281 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.7368 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7013 | 100.0000 | 97.4359 | 78.8043 | 37 | 0 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 82.2917 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.3301 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.3265 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.1194 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 97.2973 | 100.0000 | 94.7368 | 95.2970 | 18 | 0 | 18 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.8903 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 98.1132 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 80.0000 | 80.0000 | 80.0000 | 98.1203 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.2906 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 98.0198 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 89.6552 | 86.6667 | 92.8571 | 97.3231 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.7638 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 97.5986 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.1510 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 97.5986 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.1510 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3607 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.2857 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.7679 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2973 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4845 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.0826 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3548 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8636 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3921 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.9305 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.4048 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |