PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49351-49400 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3479 | 98.8298 | 99.8715 | 53.0817 | 3885 | 46 | 3885 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5600 | 99.2006 | 99.9221 | 57.7897 | 3847 | 31 | 3847 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3754 | 98.8773 | 99.8785 | 57.1429 | 2466 | 28 | 2466 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.1286 | 83.9378 | 97.3054 | 91.0094 | 324 | 62 | 325 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.8589 | 78.9855 | 96.4758 | 90.1732 | 218 | 58 | 219 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.6959 | 96.3636 | 99.0654 | 92.3517 | 106 | 4 | 106 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7569 | 99.5658 | 99.9487 | 80.8702 | 3898 | 17 | 3898 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1918 | 71.4286 | 96.7742 | 97.3299 | 30 | 12 | 30 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.6471 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1734 | 98.6530 | 99.6994 | 37.5173 | 11279 | 154 | 11276 | 34 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.3481 | 68.6275 | 88.6076 | 92.5047 | 70 | 32 | 70 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4561 | 99.0468 | 99.8688 | 31.9345 | 4572 | 44 | 4568 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | segdup | het | 99.5302 | 99.7344 | 99.3269 | 90.9417 | 17271 | 46 | 17265 | 117 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | func_cds | * | 99.9166 | 99.9710 | 99.8623 | 22.6414 | 13783 | 4 | 13781 | 19 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | func_cds | het | 99.8707 | 99.9647 | 99.7769 | 23.7626 | 8501 | 3 | 8499 | 19 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6498 | 97.8448 | 99.4681 | 65.4748 | 3178 | 70 | 3179 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0002 | 96.8379 | 99.1907 | 64.6712 | 1960 | 64 | 1961 | 16 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5098 | 99.9180 | 66.6027 | 1218 | 6 | 1218 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6105 | 97.8651 | 99.3674 | 66.4258 | 19161 | 418 | 19162 | 122 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4235 | 99.0875 | 99.7618 | 50.0170 | 2932 | 27 | 2932 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1767 | 98.6892 | 99.6691 | 48.1704 | 1807 | 24 | 1807 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8225 | 99.7340 | 99.9112 | 52.5895 | 1125 | 3 | 1125 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5873 | 99.2770 | 99.8996 | 46.3020 | 3982 | 29 | 3982 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4277 | 99.0173 | 99.8415 | 46.1817 | 2519 | 25 | 2519 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5680 | 99.2210 | 99.9174 | 48.2147 | 2420 | 19 | 2420 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4278 | 98.9873 | 99.8723 | 47.9734 | 1564 | 16 | 1564 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8723 | 85.5204 | 96.9388 | 91.1030 | 189 | 32 | 190 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.5596 | 80.9211 | 95.3846 | 90.3561 | 123 | 29 | 124 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.6381 | 88.5802 | 99.3086 | 86.9266 | 1148 | 148 | 1149 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.3644 | 83.1962 | 98.8842 | 87.6910 | 708 | 143 | 709 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.9147 | 88.7681 | 99.6948 | 86.0725 | 980 | 124 | 980 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.5375 | 83.0556 | 99.5008 | 87.1910 | 598 | 122 | 598 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3477 | 97.0107 | 99.7221 | 77.9349 | 6458 | 199 | 6459 | 18 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5317 | 95.5639 | 99.5821 | 76.9923 | 4050 | 188 | 4051 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7512 | 99.5449 | 99.9585 | 79.2911 | 2406 | 11 | 2406 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6105 | 97.8651 | 99.3674 | 66.4258 | 19161 | 418 | 19162 | 122 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1795 | 96.4441 | 99.9786 | 67.5115 | 4665 | 172 | 4665 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2091 | 94.5997 | 99.9664 | 68.3186 | 2978 | 170 | 2978 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6074 | 99.3012 | 99.9156 | 37.6986 | 10657 | 75 | 10657 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3742 | 98.8879 | 99.8652 | 37.8733 | 6669 | 75 | 6669 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.4167 | 81.1881 | 90.1099 | 93.4106 | 82 | 19 | 82 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6765 | 99.4754 | 99.8784 | 28.4513 | 2465 | 13 | 2464 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | segdup | het | 99.5229 | 99.7257 | 99.3210 | 90.4269 | 11997 | 33 | 11995 | 82 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | func_cds | * | 99.9200 | 100.0000 | 99.8401 | 29.0024 | 4371 | 0 | 4370 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | func_cds | het | 99.8684 | 100.0000 | 99.7371 | 30.5787 | 2657 | 0 | 2656 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.9477 | 94.4556 | 99.5749 | 66.5601 | 937 | 55 | 937 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2470 | 98.6527 | 99.8485 | 51.0567 | 1318 | 18 | 1318 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8194 | 97.8947 | 99.7616 | 48.6536 | 837 | 18 | 837 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4917 | 99.0340 | 99.9536 | 62.8172 | 2153 | 21 | 2153 | 1 | 0 | 0.0000 | |