PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48951-49000 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.2857 | 89.2857 | 89.2857 | 95.0000 | 25 | 3 | 25 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 91.7369 | 89.4737 | 94.1176 | 95.4667 | 17 | 2 | 16 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 95.6204 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 87.5000 | 93.3333 | 82.3529 | 94.2568 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0000 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 98.1818 | 100.0000 | 96.4286 | 94.9911 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.3235 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 98.1818 | 100.0000 | 96.4286 | 95.6386 | 27 | 0 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.9880 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0414 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.7742 | 100.0000 | 93.7500 | 95.6989 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 95.9641 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 96.0177 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.1150 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | homalt | 94.2857 | 97.0588 | 91.6667 | 92.7419 | 33 | 1 | 33 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 37.9845 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 43.4211 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6931 | 99.5186 | 99.8683 | 44.6416 | 2274 | 11 | 2275 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 83.5294 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 75.0000 | 64.2857 | 90.0000 | 95.1691 | 9 | 5 | 9 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 90.9091 | 85.1064 | 97.5610 | 91.4938 | 40 | 7 | 40 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 89.9123 | 83.3333 | 97.6190 | 91.8605 | 40 | 8 | 41 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 89.3838 | 82.3529 | 97.7273 | 91.6667 | 42 | 9 | 43 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2973 | 98.0198 | 96.5854 | 90.5790 | 198 | 4 | 198 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 93.6170 | 95.6522 | 91.6667 | 97.1049 | 44 | 2 | 44 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.9543 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_siren | hetalt | 91.7197 | 85.7143 | 98.6301 | 91.7045 | 72 | 12 | 72 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | segdup | het | 99.4935 | 99.4220 | 99.5652 | 94.2192 | 688 | 4 | 687 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.1349 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0645 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.1135 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 54.9038 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7636 | 100.0000 | 99.5283 | 45.6410 | 211 | 0 | 211 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.6000 | 82.3529 | 98.2456 | 96.4128 | 56 | 12 | 56 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.1169 | 72.7273 | 96.9697 | 96.7836 | 32 | 12 | 32 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.6552 | 92.8571 | 86.6667 | 95.1378 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 95.3271 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 96.4789 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.3060 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9102 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.6113 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 95.2174 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |