PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48901-48950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4872 | 99.1352 | 99.8416 | 45.8405 | 2522 | 22 | 2522 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5301 | 86.8778 | 98.9691 | 90.9683 | 192 | 29 | 192 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.0000 | 82.8947 | 98.4375 | 90.7581 | 126 | 26 | 126 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.9208 | 88.8117 | 99.6537 | 86.9255 | 1151 | 145 | 1151 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8046 | 83.5488 | 99.4406 | 88.0415 | 711 | 140 | 711 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.0613 | 88.9493 | 99.7967 | 86.1115 | 982 | 122 | 982 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.7716 | 83.3333 | 99.6678 | 87.5130 | 600 | 120 | 600 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4463 | 97.0858 | 99.8455 | 77.6924 | 6463 | 194 | 6463 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6632 | 95.6583 | 99.7539 | 76.8156 | 4054 | 184 | 4054 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8143 | 97.9008 | 99.7450 | 65.3085 | 19168 | 411 | 19168 | 49 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3889 | 98.8731 | 99.9101 | 37.5970 | 6668 | 76 | 6668 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.8396 | 83.1683 | 97.6744 | 93.4799 | 84 | 17 | 84 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | tech_badpromoters | * | 97.5000 | 99.3631 | 95.7055 | 49.3789 | 156 | 1 | 156 | 7 | 0 | 0.0000 | |
| jlack-gatk | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 50.5882 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0461 | 99.2354 | 98.8575 | 51.9477 | 1817 | 14 | 1817 | 21 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4518 | 99.8428 | 99.0640 | 53.5675 | 2540 | 4 | 2540 | 24 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7138 | 100.0000 | 99.4293 | 53.4182 | 2439 | 0 | 2439 | 14 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5589 | 100.0000 | 99.1217 | 56.3407 | 1580 | 0 | 1580 | 14 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7419 | 99.8278 | 99.6562 | 49.2016 | 4058 | 7 | 4058 | 14 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | * | 98.2659 | 100.0000 | 96.5909 | 46.0123 | 85 | 0 | 85 | 3 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | het | 96.7033 | 100.0000 | 93.6170 | 48.9130 | 44 | 0 | 44 | 3 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | func_cds | * | 98.8573 | 99.9771 | 97.7624 | 38.5704 | 4370 | 1 | 4369 | 100 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | func_cds | het | 98.1334 | 99.9624 | 96.3702 | 44.4444 | 2656 | 1 | 2655 | 100 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2881 | 99.1766 | 99.3998 | 50.9385 | 1325 | 11 | 1325 | 8 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8869 | 98.7135 | 99.0610 | 53.7961 | 844 | 11 | 844 | 8 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | segdup | het | 96.4748 | 99.7163 | 93.4374 | 95.6607 | 5272 | 15 | 5268 | 370 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 52.8302 | 71 | 1 | 71 | 4 | 0 | 0.0000 | |
| jlack-gatk | SNP | tv | tech_badpromoters | het | 94.2857 | 100.0000 | 89.1892 | 52.5641 | 33 | 0 | 33 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | * | func_cds | het | 99.2974 | 99.0654 | 99.5305 | 45.8015 | 212 | 2 | 212 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.1418 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.3392 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.2340 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4369 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.8678 | 82.2581 | 99.0291 | 99.9257 | 102 | 22 | 102 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 86.4432 | 77.0115 | 98.5075 | 99.9051 | 67 | 20 | 66 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | hetalt | 90.3728 | 84.8485 | 96.6667 | 91.4040 | 28 | 5 | 29 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 93.6206 | 88.7097 | 99.1071 | 86.4571 | 110 | 14 | 111 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 93.2274 | 88.0000 | 99.1150 | 87.3884 | 110 | 15 | 112 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_siren | hetalt | 93.3352 | 87.8543 | 99.5455 | 87.1345 | 217 | 30 | 219 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0602 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.1818 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0366 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.1818 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5935 | 99.3915 | 99.7963 | 54.1550 | 490 | 3 | 490 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7636 | 100.0000 | 99.5283 | 45.3608 | 211 | 0 | 211 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0415 | 98.7261 | 99.3590 | 62.7685 | 155 | 2 | 155 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4775 | 96.7213 | 98.2456 | 75.2174 | 59 | 2 | 56 | 1 | 0 | 0.0000 | |