PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48451-48500 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | het | 91.8033 | 93.3333 | 90.3226 | 98.0000 | 56 | 4 | 56 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | het | 91.7293 | 92.4242 | 91.0448 | 98.1295 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e1 | het | 91.7293 | 92.4242 | 91.0448 | 98.1892 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | segdup | het | 98.7001 | 98.6989 | 98.7013 | 96.8242 | 531 | 7 | 532 | 7 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5380 | 97.9508 | 99.1323 | 82.5906 | 478 | 10 | 457 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.2456 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2409 | 98.7069 | 99.7807 | 72.5962 | 458 | 6 | 455 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | * | 96.8610 | 94.7368 | 99.0826 | 89.8321 | 108 | 6 | 108 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | het | 96.5517 | 94.9153 | 98.2456 | 91.6176 | 56 | 3 | 56 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9163 | 94.8276 | 99.0991 | 90.5932 | 110 | 6 | 110 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | het | 96.6667 | 95.0820 | 98.3051 | 92.1333 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9163 | 94.8276 | 99.0991 | 90.8113 | 110 | 6 | 110 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | het | 96.6667 | 95.0820 | 98.3051 | 92.3177 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | * | 94.1176 | 90.5660 | 97.9592 | 93.5948 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 94.4773 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | * | 94.1176 | 90.5660 | 97.9592 | 94.3353 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 95.0877 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | * | 94.1176 | 90.5660 | 97.9592 | 94.4758 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 95.2055 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | het | 96.7742 | 94.4056 | 99.2647 | 88.7696 | 135 | 8 | 135 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | * | 98.5591 | 97.7143 | 99.4186 | 93.9373 | 171 | 4 | 171 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 95.4267 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | func_cds | * | 99.7574 | 99.7080 | 99.8069 | 31.6969 | 18097 | 53 | 18094 | 35 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | func_cds | het | 99.7448 | 99.8029 | 99.6867 | 36.7154 | 11139 | 22 | 11136 | 35 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8325 | 99.9226 | 99.7426 | 60.4661 | 3875 | 3 | 3875 | 10 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7799 | 99.9599 | 99.6005 | 62.1560 | 2493 | 1 | 2493 | 10 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | * | 64.0727 | 47.4439 | 98.6485 | 91.7531 | 9197 | 10188 | 9197 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | het | 75.2621 | 60.9365 | 98.3935 | 91.9254 | 7717 | 4947 | 7717 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | * | 60.5419 | 43.7334 | 98.3368 | 94.2598 | 5262 | 6770 | 5262 | 89 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l150_m0_e0 | het | 71.5668 | 56.3476 | 98.0495 | 94.3303 | 4474 | 3466 | 4474 | 89 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | * | 54.9244 | 38.2670 | 97.2619 | 98.4570 | 817 | 1318 | 817 | 23 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m0_e0 | het | 61.5036 | 45.0863 | 96.7236 | 98.5089 | 679 | 827 | 679 | 23 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | * | 57.9563 | 41.1520 | 97.9565 | 97.0469 | 2972 | 4250 | 2972 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | * | 59.1976 | 42.3843 | 98.1210 | 97.1166 | 3342 | 4543 | 3342 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | het | 69.2853 | 53.6581 | 97.7552 | 97.1324 | 2787 | 2407 | 2787 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | * | 59.3854 | 42.5817 | 98.0963 | 97.1254 | 3401 | 4586 | 3401 | 66 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e1 | het | 69.4427 | 53.8564 | 97.7249 | 97.1454 | 2835 | 2429 | 2835 | 66 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | func_cds | * | 99.7642 | 99.7244 | 99.8040 | 29.1716 | 13749 | 38 | 13747 | 27 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | func_cds | het | 99.7473 | 99.8119 | 99.6828 | 33.7510 | 8488 | 16 | 8486 | 27 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.9181 | 100.0000 | 99.8363 | 52.3782 | 2439 | 0 | 2439 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8736 | 100.0000 | 99.7475 | 55.0256 | 1580 | 0 | 1580 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | * | 64.3231 | 47.6728 | 98.8465 | 91.2321 | 6084 | 6678 | 6084 | 71 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | het | 75.6119 | 61.3095 | 98.6179 | 91.4278 | 5066 | 3197 | 5066 | 71 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | * | 60.7533 | 43.9130 | 98.5441 | 93.9394 | 3452 | 4409 | 3452 | 51 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m0_e0 | het | 72.0358 | 56.8570 | 98.2706 | 94.0511 | 2898 | 2199 | 2898 | 51 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | * | 55.0131 | 38.2482 | 97.9439 | 98.4056 | 524 | 846 | 524 | 11 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | het | 62.2449 | 45.7173 | 97.4886 | 98.4812 | 427 | 507 | 427 | 11 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | * | 58.4497 | 41.5811 | 98.3471 | 96.9616 | 1904 | 2675 | 1904 | 32 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | het | 68.5076 | 52.6617 | 97.9937 | 97.0232 | 1563 | 1405 | 1563 | 32 | 0 | 0.0000 | |