PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47551-47600 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4749 | 99.2515 | 99.6992 | 51.2106 | 1326 | 10 | 1326 | 4 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1784 | 98.8304 | 99.5289 | 53.9837 | 845 | 10 | 845 | 4 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7702 | 99.8620 | 99.6786 | 64.4814 | 2171 | 3 | 2171 | 7 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6761 | 99.8558 | 99.4971 | 65.7565 | 1385 | 2 | 1385 | 7 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7574 | 99.9306 | 99.5848 | 69.2619 | 1439 | 1 | 1439 | 6 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6728 | 100.0000 | 99.3478 | 70.2554 | 914 | 0 | 914 | 6 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.7746 | 94.4444 | 97.1429 | 88.4488 | 34 | 2 | 34 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m0_e0 | homalt | 75.2796 | 60.3744 | 99.9570 | 73.4271 | 2322 | 1524 | 2322 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.0884 | 69.6340 | 99.9682 | 68.5726 | 6297 | 2746 | 6297 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | homalt | 82.4340 | 70.1324 | 99.9691 | 70.6315 | 6462 | 2752 | 6462 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.5549 | 70.3075 | 99.9694 | 70.5594 | 6540 | 2762 | 6540 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | homalt | 68.6373 | 52.2738 | 99.9139 | 81.5935 | 1161 | 1060 | 1161 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | homalt | 75.5546 | 60.7338 | 99.9438 | 75.6613 | 3559 | 2301 | 3559 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | homalt | 76.1523 | 61.5091 | 99.9460 | 77.4235 | 3701 | 2316 | 3701 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.2777 | 61.6727 | 99.9466 | 77.3753 | 3746 | 2328 | 3746 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8020 | 54.8150 | 99.9538 | 81.0192 | 2163 | 1783 | 2163 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | homalt | 71.6934 | 55.8903 | 99.9562 | 82.4006 | 2282 | 1801 | 2282 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | homalt | 71.8426 | 56.0716 | 99.9569 | 82.3233 | 2318 | 1816 | 2318 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | * | 61.2245 | 45.0980 | 95.3039 | 98.2741 | 345 | 420 | 345 | 17 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | het | 61.4118 | 45.6294 | 93.8849 | 98.4770 | 261 | 311 | 261 | 17 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | segdup | het | 98.3440 | 99.4704 | 97.2428 | 95.8012 | 5259 | 28 | 5255 | 149 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | homalt | 64.7541 | 48.1707 | 98.7500 | 85.5596 | 79 | 85 | 79 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | tech_badpromoters | het | 76.5957 | 93.5065 | 64.8649 | 45.0495 | 72 | 5 | 72 | 39 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.4286 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 77.7778 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.8182 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 88.8889 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 89.1892 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.5909 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | het | 79.2079 | 90.9091 | 70.1754 | 39.3617 | 40 | 4 | 40 | 17 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 28.5714 | 50.0000 | 20.0000 | 72.2222 | 1 | 1 | 1 | 4 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 33.3333 | 50.0000 | 25.0000 | 73.3333 | 1 | 1 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 13.3333 | 100.0000 | 7.1429 | 86.0000 | 1 | 0 | 1 | 13 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 15.3846 | 100.0000 | 8.3333 | 80.6452 | 1 | 0 | 1 | 11 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | tv | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | * | 84.1610 | 97.2222 | 74.1935 | 52.7919 | 70 | 2 | 69 | 24 | 0 | 0.0000 | |