PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47401-47450 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5164 | 92.1569 | 97.0000 | 93.1741 | 94 | 8 | 97 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8509 | 99.8255 | 99.8764 | 47.5826 | 4004 | 7 | 4039 | 5 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8239 | 99.8428 | 99.8051 | 49.9512 | 2540 | 4 | 2560 | 5 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.9182 | 99.9590 | 99.8774 | 49.7020 | 2438 | 1 | 2444 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9052 | 100.0000 | 99.8105 | 51.3073 | 1580 | 0 | 1580 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.4406 | 92.0792 | 99.0566 | 93.2954 | 93 | 8 | 105 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5236 | 90.9091 | 98.4375 | 94.3662 | 60 | 6 | 63 | 1 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | func_cds | * | 99.3521 | 99.9771 | 98.7347 | 37.1039 | 4370 | 1 | 4370 | 56 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | func_cds | het | 98.9383 | 99.9624 | 97.9351 | 42.1131 | 2656 | 1 | 2656 | 56 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6641 | 98.6641 | 98.6641 | 63.0726 | 517 | 7 | 517 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9091 | 97.5610 | 85.1064 | 89.8488 | 40 | 1 | 40 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.2069 | 96.1538 | 78.1250 | 95.6224 | 25 | 1 | 25 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 72.0000 | 100.0000 | 56.2500 | 91.0112 | 9 | 0 | 9 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2381 | 95.2381 | 95.2381 | 89.9522 | 40 | 2 | 40 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4444 | 94.4444 | 94.4444 | 89.0578 | 34 | 2 | 34 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | het | 95.0131 | 94.9301 | 95.0963 | 94.2428 | 543 | 29 | 543 | 28 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | segdup | het | 97.4236 | 99.7730 | 95.1822 | 94.3912 | 5275 | 12 | 5275 | 267 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.6190 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.3333 | 92.7885 | 0 | 0 | 14 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 93.9024 | 0 | 0 | 9 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 96.7742 | 96.0154 | 0 | 0 | 30 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 95.2381 | 96.4103 | 0 | 0 | 20 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 95.4545 | 96.6565 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 93.7500 | 96.7480 | 0 | 0 | 15 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 78.2609 | 96.7537 | 0 | 0 | 72 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.9036 | 96.3850 | 0 | 0 | 63 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 97.4684 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 97.0149 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 93.9286 | 0 | 1 | 64 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 92.4528 | 93.7204 | 0 | 1 | 49 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0645 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 97.6378 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.0000 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 80.0000 | 94.9495 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 96.3636 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 96.2025 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 95.0820 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 96.7391 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 96.8085 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 95.7746 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 98.0392 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 83.4019 | 84.2105 | 82.6087 | 94.8081 | 16 | 3 | 19 | 4 | 0 | 0.0000 | |