PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46751-46800 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 34.7670 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 48.2456 | 58 | 1 | 57 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9744 | 0 | 1 | 0 | 19 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.9713 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9783 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.4883 | 73.2719 | 80.0000 | 75.0000 | 159 | 58 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | decoy | * | 0.0000 | 0.0000 | 99.9286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | decoy | homalt | 0.0000 | 0.0000 | 99.5595 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.9466 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.6471 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.7480 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.8885 | 77.2727 | 96.6667 | 81.2500 | 34 | 10 | 29 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 50.0000 | 0.0000 | 96.5981 | 1 | 1 | 0 | 81 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 96.5184 | 0 | 0 | 0 | 54 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 95.8140 | 0 | 0 | 0 | 27 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 61.0354 | 58.3333 | 64.0000 | 82.6389 | 7 | 5 | 16 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 61.0583 | 75.7576 | 51.1364 | 71.4286 | 25 | 8 | 45 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 61.4480 | 75.7576 | 51.6854 | 73.5905 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 61.4480 | 75.7576 | 51.6854 | 74.0525 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 58.3333 | 50.0000 | 70.0000 | 90.0990 | 3 | 3 | 7 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 74.1573 | 73.3333 | 75.0000 | 82.9787 | 11 | 4 | 24 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 75.1899 | 73.3333 | 77.1429 | 83.7209 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 75.1899 | 73.3333 | 77.1429 | 84.1629 | 11 | 4 | 27 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | homalt | 36.3636 | 25.0000 | 66.6667 | 92.1053 | 1 | 3 | 4 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 56.6038 | 42.8571 | 83.3333 | 90.4762 | 3 | 4 | 10 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 57.3529 | 42.8571 | 86.6667 | 90.0000 | 3 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 63.4146 | 50.0000 | 86.6667 | 90.4459 | 4 | 4 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 75.0000 | 98.7915 | 0 | 1 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 99.2424 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.5484 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.7500 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | * | 99.4083 | 100.0000 | 98.8235 | 44.4444 | 85 | 0 | 84 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | func_cds | * | 99.6678 | 99.6797 | 99.6560 | 35.7311 | 4357 | 14 | 4345 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | func_cds | het | 99.5488 | 99.6613 | 99.4365 | 40.8444 | 2648 | 9 | 2647 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.1612 | 99.7917 | 98.5386 | 73.9012 | 1437 | 3 | 1416 | 21 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.6811 | 99.6718 | 97.7099 | 74.8698 | 911 | 3 | 896 | 21 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6287 | 99.3874 | 99.8711 | 62.1463 | 6976 | 43 | 6975 | 9 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | het | 91.4286 | 96.9697 | 86.4865 | 51.9481 | 32 | 1 | 32 | 5 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | func_cds | * | 99.2118 | 98.8764 | 99.5495 | 41.6557 | 440 | 5 | 442 | 2 | 0 | 0.0000 | |