PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46451-46500 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2481 | 99.0050 | 99.4924 | 85.2434 | 199 | 2 | 196 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7011 | 96.2335 | 99.2141 | 86.1081 | 511 | 20 | 505 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | het | 96.5995 | 94.3218 | 98.9899 | 84.6986 | 299 | 18 | 294 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2605 | 99.0196 | 99.5025 | 85.2747 | 202 | 2 | 200 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | * | 93.7037 | 91.6667 | 95.8333 | 95.3307 | 22 | 2 | 23 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m0_e0 | het | 89.6552 | 86.6667 | 92.8571 | 94.4444 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | het | 92.2036 | 88.3333 | 96.4286 | 92.1897 | 53 | 7 | 54 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.4627 | 92.9204 | 98.1481 | 93.7895 | 105 | 8 | 106 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | het | 92.9378 | 89.3939 | 96.7742 | 93.0023 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5035 | 92.9825 | 98.1651 | 93.9646 | 106 | 8 | 107 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | het | 92.9378 | 89.3939 | 96.7742 | 93.3405 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | * | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 43.7500 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4842 | 97.5124 | 99.4755 | 64.3614 | 588 | 15 | 569 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9164 | 96.9262 | 98.9270 | 73.8349 | 473 | 15 | 461 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.1292 | 82.8571 | 96.4286 | 83.8150 | 29 | 6 | 27 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2797 | 99.2823 | 99.2771 | 46.2435 | 415 | 3 | 412 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | het | 96.3922 | 93.7063 | 99.2366 | 78.1667 | 134 | 9 | 130 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.9507 | 98.3108 | 99.5989 | 82.2763 | 2328 | 40 | 2235 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.0937 | 98.8111 | 99.3780 | 84.1286 | 1496 | 18 | 1438 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | het | 96.8156 | 94.0050 | 99.7994 | 59.7632 | 7464 | 476 | 7461 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | * | 98.7421 | 100.0000 | 97.5155 | 54.2614 | 157 | 0 | 157 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | het | 97.4684 | 100.0000 | 95.0617 | 59.0909 | 77 | 0 | 77 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2421 | 99.1889 | 97.3132 | 58.3402 | 2935 | 24 | 2970 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3212 | 98.9623 | 95.7336 | 62.0458 | 1812 | 19 | 1840 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2263 | 99.6260 | 98.8298 | 49.0498 | 3996 | 15 | 4054 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9220 | 99.6855 | 98.1700 | 51.8185 | 2536 | 8 | 2575 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.7950 | 99.3947 | 49.7872 | 2434 | 5 | 2463 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4692 | 99.8734 | 99.0683 | 51.6226 | 1578 | 2 | 1595 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5254 | 97.5543 | 99.5160 | 81.1874 | 1077 | 27 | 1028 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8005 | 98.3333 | 99.2722 | 82.8678 | 708 | 12 | 682 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.5768 | 56.2500 | 84.6154 | 95.9248 | 9 | 7 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 50.0000 | 75.0000 | 96.8627 | 5 | 5 | 6 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7486 | 99.5235 | 99.9748 | 31.2218 | 3968 | 19 | 3962 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6572 | 99.5964 | 99.7181 | 27.1206 | 2468 | 10 | 2476 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | het | 97.6557 | 95.5343 | 99.8735 | 55.0552 | 7894 | 369 | 7894 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | het | 96.9091 | 94.1142 | 99.8751 | 60.5146 | 4797 | 300 | 4797 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | het | 92.9143 | 87.0450 | 99.6324 | 79.6863 | 813 | 121 | 813 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | * | 98.8372 | 100.0000 | 97.7011 | 47.9042 | 85 | 0 | 85 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | het | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 44 | 0 | 44 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | func_cds | * | 99.5213 | 99.8856 | 99.1597 | 26.7631 | 4366 | 5 | 4366 | 37 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | func_cds | het | 99.2144 | 99.8118 | 98.6240 | 27.1866 | 2652 | 5 | 2652 | 37 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5837 | 99.2071 | 99.9631 | 70.9548 | 5380 | 43 | 5419 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8215 | 86.6667 | 95.3947 | 86.7596 | 143 | 22 | 145 | 7 | 0 | 0.0000 | |