PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46401-46450 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7013 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.2603 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 87.5000 | 87.5000 | 87.5000 | 96.8127 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.8944 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 87.5000 | 87.5000 | 87.5000 | 96.9349 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | * | 99.9367 | 99.9614 | 99.9119 | 23.5700 | 18143 | 7 | 18143 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4571 | 99.1580 | 99.7580 | 57.7755 | 2473 | 21 | 2473 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | func_cds | * | 99.9384 | 99.9565 | 99.9202 | 22.0527 | 13781 | 6 | 13781 | 11 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | func_cds | het | 99.9118 | 99.9530 | 99.8708 | 22.7256 | 8500 | 4 | 8500 | 11 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5243 | 99.3038 | 99.7457 | 47.7582 | 1569 | 11 | 1569 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7564 | 99.5904 | 99.9230 | 28.4060 | 3890 | 16 | 3891 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6764 | 99.4350 | 99.9189 | 28.6252 | 2464 | 14 | 2464 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8949 | 99.8598 | 99.9299 | 27.9657 | 1425 | 2 | 1426 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 86.6667 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 87.5000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | het | 86.6667 | 79.5918 | 95.1220 | 66.6667 | 39 | 10 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | * | 99.7230 | 100.0000 | 99.4475 | 26.7206 | 180 | 0 | 180 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | het | 99.1597 | 100.0000 | 98.3333 | 25.9259 | 59 | 0 | 59 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2072 | 98.6486 | 99.7720 | 62.8458 | 1314 | 18 | 1313 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.8616 | 84.3137 | 85.4167 | 89.2135 | 43 | 8 | 41 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2454 | 98.9362 | 99.5565 | 60.8846 | 465 | 5 | 449 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4350 | 99.2509 | 99.6198 | 57.2358 | 265 | 2 | 262 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9574 | 92.0000 | 96.0000 | 57.6271 | 23 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 85.0000 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | het | 96.3873 | 94.1718 | 98.7097 | 75.2988 | 307 | 19 | 306 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.5190 | 96.2677 | 98.8032 | 75.9360 | 748 | 29 | 743 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.8801 | 95.1613 | 98.6622 | 81.1713 | 295 | 15 | 295 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4509 | 92.7083 | 98.3607 | 79.0138 | 178 | 14 | 180 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1110 | 99.1228 | 99.0991 | 78.8571 | 113 | 1 | 110 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.1712 | 97.1084 | 99.2574 | 80.1572 | 806 | 24 | 802 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.2781 | 95.6790 | 98.9316 | 78.1818 | 465 | 21 | 463 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3846 | 99.0826 | 99.6885 | 78.7135 | 324 | 3 | 320 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.0491 | 96.8495 | 99.2788 | 82.1574 | 830 | 27 | 826 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | het | 97.2343 | 95.5734 | 98.9540 | 80.5770 | 475 | 22 | 473 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2619 | 98.8270 | 99.7006 | 80.6936 | 337 | 4 | 333 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.9652 | 96.8966 | 99.0577 | 82.2719 | 843 | 27 | 841 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | het | 97.1976 | 95.6693 | 98.7755 | 80.7617 | 486 | 22 | 484 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1211 | 98.8338 | 99.4100 | 80.8041 | 339 | 4 | 337 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 85.6041 | 167 | 9 | 166 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | het | 95.1456 | 92.4528 | 98.0000 | 84.0510 | 98 | 8 | 98 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | * | 97.6874 | 96.2451 | 99.1736 | 84.0842 | 487 | 19 | 480 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | het | 96.5664 | 94.3144 | 98.9286 | 82.5218 | 282 | 17 | 277 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2366 | 98.9899 | 99.4845 | 82.8773 | 196 | 2 | 193 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6462 | 96.1464 | 99.1935 | 86.0635 | 499 | 20 | 492 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | het | 96.5090 | 94.1748 | 98.9619 | 84.5620 | 291 | 18 | 286 | 3 | 0 | 0.0000 | |