PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46051-46100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | func_cds | * | 99.8926 | 99.9614 | 99.8239 | 23.4025 | 18143 | 7 | 18140 | 32 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | func_cds | het | 99.8299 | 99.9462 | 99.7139 | 24.9799 | 11155 | 6 | 11152 | 32 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2989 | 98.9290 | 99.6716 | 45.6458 | 4249 | 46 | 4249 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9332 | 98.3991 | 99.4731 | 46.9555 | 2643 | 43 | 2643 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5867 | 99.3693 | 99.8051 | 53.1359 | 6145 | 39 | 6145 | 12 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3619 | 99.0333 | 99.6927 | 53.9179 | 3893 | 38 | 3893 | 12 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6255 | 99.4585 | 99.7930 | 57.9022 | 3857 | 21 | 3857 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4171 | 99.1580 | 99.6775 | 58.2394 | 2473 | 21 | 2473 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.2222 | 95.4545 | 99.0566 | 90.3811 | 105 | 5 | 105 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | func_cds | * | 99.8985 | 99.9565 | 99.8406 | 21.8782 | 13781 | 6 | 13779 | 22 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | func_cds | het | 99.8414 | 99.9412 | 99.7418 | 23.3144 | 8499 | 5 | 8497 | 22 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7585 | 97.9680 | 99.5620 | 62.6286 | 3182 | 66 | 3182 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.1509 | 97.0356 | 99.2922 | 64.9042 | 1964 | 60 | 1964 | 14 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3054 | 99.0537 | 99.5584 | 45.3803 | 2931 | 28 | 2931 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9589 | 98.6346 | 99.2853 | 46.9834 | 1806 | 25 | 1806 | 13 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6003 | 99.4016 | 99.7997 | 45.8452 | 3987 | 24 | 3987 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3889 | 99.0959 | 99.6837 | 47.2135 | 2521 | 23 | 2521 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6302 | 99.4260 | 99.8353 | 48.5599 | 2425 | 14 | 2425 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4286 | 99.1139 | 99.7452 | 49.4364 | 1566 | 14 | 1566 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7536 | 86.8778 | 99.4819 | 90.7523 | 192 | 29 | 192 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3226 | 82.8947 | 99.2126 | 91.1560 | 126 | 26 | 126 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6360 | 99.4350 | 99.8379 | 27.9708 | 2464 | 14 | 2463 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | het | 96.7570 | 97.4304 | 96.0929 | 92.6538 | 910 | 24 | 910 | 37 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | * | 99.8743 | 99.9771 | 99.7716 | 27.8940 | 4370 | 1 | 4369 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | het | 99.7933 | 99.9624 | 99.6248 | 29.8500 | 2656 | 1 | 2655 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 46.2291 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8777 | 97.8947 | 99.8807 | 46.8948 | 837 | 18 | 837 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5619 | 99.3100 | 99.8151 | 62.4675 | 2159 | 15 | 2159 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3123 | 98.9185 | 99.7093 | 62.6392 | 1372 | 15 | 1372 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6177 | 99.5139 | 99.7216 | 67.7875 | 1433 | 7 | 1433 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3973 | 99.2341 | 99.5609 | 67.8773 | 907 | 7 | 907 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.2963 | 95.1220 | 97.5000 | 91.1700 | 39 | 2 | 39 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0674 | 99.0875 | 99.0472 | 37.3044 | 7384 | 68 | 7381 | 71 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5286 | 98.5711 | 98.4861 | 38.0204 | 4622 | 67 | 4619 | 71 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | segdup | het | 99.3773 | 99.6595 | 99.0966 | 91.7904 | 5269 | 18 | 5265 | 48 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | hetalt | 93.9394 | 93.9394 | 93.9394 | 92.4485 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | hetalt | 92.8270 | 88.7097 | 97.3451 | 88.4694 | 110 | 14 | 110 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | hetalt | 92.8571 | 88.6364 | 97.5000 | 88.9807 | 117 | 15 | 117 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | hetalt | 91.6667 | 100.0000 | 84.6154 | 95.9627 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 94.1411 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 96.1390 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 96.2901 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 99.3464 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1333 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |