PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45901-45950 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 100.0000 | 86.6667 | 98.1527 | 1 | 0 | 13 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 75.0000 | 95.3125 | 0 | 1 | 9 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 1 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.0000 | 100.0000 | 66.6667 | 96.3415 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.6667 | 100.0000 | 50.0000 | 96.8750 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 57.1429 | 99.3671 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 50.0000 | 99.3143 | 0 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | * | het | 87.0588 | 100.0000 | 77.0833 | 96.5368 | 7 | 0 | 37 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | het | 97.2222 | 100.0000 | 94.5946 | 90.1070 | 4 | 0 | 35 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.7805 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.8485 | 100.0000 | 73.6842 | 97.0769 | 1 | 0 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.0000 | 100.0000 | 78.5714 | 97.0213 | 1 | 0 | 11 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 97.5904 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 95.2381 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.8750 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 62.5000 | 96.4758 | 0 | 0 | 5 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 70.0000 | 96.0784 | 0 | 0 | 7 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 62.5000 | 95.9184 | 0 | 0 | 5 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 96.3934 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 96.4413 | 0 | 0 | 7 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 57.1429 | 96.6507 | 0 | 0 | 4 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 94.6429 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 99.4792 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 99.3506 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | decoy | * | 62.5000 | 100.0000 | 45.4545 | 99.0196 | 6 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | het | 75.0000 | 100.0000 | 60.0000 | 99.4076 | 4 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | homalt | 50.0000 | 100.0000 | 33.3333 | 97.8417 | 2 | 0 | 2 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | * | 61.5385 | 100.0000 | 44.4444 | 64.4737 | 12 | 0 | 12 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | het | 61.5385 | 100.0000 | 44.4444 | 68.4211 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | homalt | 61.5385 | 100.0000 | 44.4444 | 52.6316 | 4 | 0 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 54.5455 | 50.0000 | 60.0000 | 98.9980 | 2 | 2 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8131 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 54.5455 | 50.0000 | 60.0000 | 98.9733 | 2 | 2 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 34.7826 | 80.0000 | 22.2222 | 97.4755 | 4 | 1 | 4 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 27.5766 | 73.3333 | 16.9811 | 93.8799 | 11 | 4 | 9 | 44 | 0 | 0.0000 | |