PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45551-45600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I6_15 | segdup | het | 95.9064 | 98.7952 | 93.1818 | 95.3733 | 82 | 1 | 82 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8583 | 99.9226 | 99.7940 | 60.8923 | 3875 | 3 | 3875 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7998 | 99.9198 | 99.6800 | 62.5636 | 2492 | 2 | 2492 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8975 | 99.9180 | 99.8770 | 52.7132 | 2437 | 2 | 2437 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8418 | 99.8734 | 99.8102 | 55.3516 | 1578 | 2 | 1578 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | func_cds | * | 99.2038 | 99.7941 | 98.6205 | 39.0741 | 4362 | 9 | 4361 | 61 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | func_cds | het | 98.8082 | 99.8871 | 97.7524 | 44.9828 | 2654 | 3 | 2653 | 61 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5118 | 99.1766 | 99.8493 | 51.4275 | 1325 | 11 | 1325 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2357 | 98.7135 | 99.7636 | 53.9967 | 844 | 11 | 844 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8161 | 99.8620 | 99.7702 | 64.9597 | 2171 | 3 | 2171 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7479 | 99.8558 | 99.6403 | 66.1800 | 1385 | 2 | 1385 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7920 | 99.9306 | 99.6537 | 69.7338 | 1439 | 1 | 1439 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7272 | 100.0000 | 99.4559 | 70.7045 | 914 | 0 | 914 | 5 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1246 | 99.5572 | 98.6958 | 41.6434 | 7419 | 33 | 7416 | 98 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7300 | 99.5308 | 97.9420 | 44.2389 | 4667 | 22 | 4664 | 98 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | het | 61.3583 | 45.8042 | 92.9078 | 98.5051 | 262 | 310 | 262 | 20 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | segdup | het | 97.3848 | 99.3758 | 95.4719 | 95.8451 | 5254 | 33 | 5250 | 249 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2825 | 96.1942 | 98.3957 | 66.2911 | 733 | 29 | 736 | 12 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.6442 | 96.0920 | 97.2028 | 69.3571 | 418 | 17 | 417 | 12 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3290 | 93.2318 | 99.6390 | 71.5167 | 551 | 40 | 552 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.0745 | 94.7064 | 99.5641 | 73.0054 | 1145 | 64 | 1142 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.1444 | 94.8248 | 99.5802 | 74.4091 | 1191 | 65 | 1186 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.1325 | 94.8738 | 99.5012 | 74.5666 | 1203 | 65 | 1197 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | het | 95.7836 | 92.1739 | 99.6875 | 74.7036 | 318 | 27 | 319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | het | 96.5285 | 93.8017 | 99.4186 | 74.9818 | 681 | 45 | 684 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | het | 96.7059 | 94.1099 | 99.4490 | 76.6409 | 719 | 45 | 722 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | het | 96.6680 | 94.1558 | 99.3179 | 76.7302 | 725 | 45 | 728 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | het | 95.8130 | 92.5311 | 99.3363 | 77.5012 | 446 | 36 | 449 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | het | 96.0834 | 92.9961 | 99.3827 | 79.1327 | 478 | 36 | 483 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | het | 96.0425 | 92.9119 | 99.3915 | 79.1102 | 485 | 37 | 490 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | het | 98.6884 | 97.8324 | 99.5595 | 91.9044 | 677 | 15 | 678 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | homalt | 99.0057 | 98.1180 | 99.9096 | 52.1005 | 1147 | 22 | 1105 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0769 | 97.6077 | 98.5507 | 70.1299 | 204 | 5 | 204 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0299 | 98.4252 | 97.6378 | 70.6019 | 125 | 2 | 124 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3000 | 98.9583 | 99.6441 | 61.5332 | 570 | 6 | 560 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4293 | 97.9167 | 98.9474 | 40.2516 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 86.4706 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 81.0726 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 82.5034 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8498 | 95.3846 | 98.3607 | 81.8452 | 62 | 3 | 60 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 81.9484 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | het | 97.8430 | 97.5000 | 98.1884 | 80.0145 | 273 | 7 | 271 | 5 | 0 | 0.0000 | |