PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45001-45050 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8485 | 93.3333 | 77.7778 | 96.5583 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.0000 | 100.0000 | 81.8182 | 97.2637 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.4359 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7732 | 98.8531 | 98.6935 | 66.7872 | 1810 | 21 | 1813 | 24 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5485 | 98.6635 | 98.4338 | 60.5864 | 2510 | 34 | 2514 | 40 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4208 | 98.5443 | 98.2976 | 60.8492 | 1557 | 23 | 1559 | 27 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.0488 | 100.0000 | 64.0000 | 97.3461 | 16 | 0 | 16 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.1390 | 6 | 0 | 6 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1706 | 98.8297 | 99.5138 | 43.4464 | 2449 | 29 | 2456 | 12 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.0492 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 95.6522 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | het | 94.3820 | 95.4545 | 93.3333 | 56.7308 | 42 | 2 | 42 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | func_cds | het | 98.3558 | 99.0591 | 97.6623 | 39.9644 | 2632 | 25 | 2632 | 63 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.5344 | 98.2456 | 98.8249 | 66.8743 | 840 | 15 | 841 | 10 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.3529 | 80.7692 | 84.0000 | 97.6258 | 21 | 5 | 21 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.4706 | 76.4706 | 76.4706 | 97.8454 | 13 | 4 | 13 | 4 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.4800 | 88.8889 | 80.4878 | 90.5747 | 32 | 4 | 33 | 8 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.9381 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 97.3684 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.7672 | 93.7824 | 97.8378 | 95.4944 | 181 | 12 | 181 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | * | 99.3231 | 98.8764 | 99.7738 | 35.4745 | 440 | 5 | 441 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | func_cds | het | 99.0610 | 98.5981 | 99.5283 | 36.1446 | 211 | 3 | 211 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2404 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.0759 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3388 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.1831 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | het | 95.3831 | 92.0666 | 98.9474 | 74.9605 | 940 | 81 | 940 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | het | 94.4773 | 90.2896 | 99.0724 | 78.4572 | 530 | 57 | 534 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | het | 96.1010 | 93.1835 | 99.2070 | 77.7758 | 1244 | 91 | 1251 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e0 | het | 96.2239 | 93.3861 | 99.2395 | 79.6156 | 1299 | 92 | 1305 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | het | 96.2007 | 93.4659 | 99.1004 | 79.7418 | 1316 | 92 | 1322 | 12 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | het | 93.3791 | 88.8563 | 98.3871 | 82.7873 | 303 | 38 | 305 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | het | 95.1397 | 91.5789 | 98.9886 | 81.0946 | 783 | 72 | 783 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | het | 95.3640 | 91.9426 | 99.0499 | 82.6284 | 833 | 73 | 834 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | het | 95.3994 | 91.9913 | 99.0698 | 82.6578 | 850 | 74 | 852 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.8843 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | het | 90.0391 | 84.9057 | 95.8333 | 93.7173 | 45 | 8 | 46 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | het | 91.2276 | 84.7368 | 98.7952 | 90.9635 | 161 | 29 | 164 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | het | 92.1221 | 86.1905 | 98.9305 | 91.5385 | 181 | 29 | 185 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | het | 92.1619 | 86.2559 | 98.9362 | 91.7616 | 182 | 29 | 186 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 49.3333 | 75 | 1 | 75 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 43.6620 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.7742 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 98.0392 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.1132 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.6390 | 90.5814 | 0 | 0 | 276 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.8889 | 95.1872 | 0 | 0 | 8 | 1 | 0 | 0.0000 | |